Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p33860 Brassica napus
A05p42760 Brassica napus
Aa31LG5G15220 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis
Actinidia05768 Actinidia chinensis
Actinidia30934 Actinidia chinensis
Ah.14g085270 Amaranthus hybridus
AL3G14990 Arabidopsis lyrata
AL6G40460 Arabidopsis lyrata
Aqoxy5G00420 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea
AT3G04830 Arabidopsis thaliana
AT5G28220 Arabidopsis thaliana
ATR0665G084 Amborella trichopoda
Atru.chr2.783 Acer truncatum
AUR62027473 Chenopodium quinoa
AUR62034008 Chenopodium quinoa
BcaB04g19294 Brassica carinata
BcaB04g19297 Brassica carinata
BcaC01g04346 Brassica carinata
BolC3t16405H Brassica oleracea
BolC3t16406H Brassica oleracea
BolC5t34901H Brassica oleracea
BraA03t12560Z Brassica rapa
BraA05t22977Z Brassica rapa
C03p41170 Brassica napus
C05p62480 Brassica napus
CAN.G134.134 Capsicum annuum
CANSAT54G0892 Cannabis sativa
CARHR079080 Cardamine hirsuta
CARHR079090 Cardamine hirsuta
Carub.0003s0402 Capsella rubella
Carub.0006s2567 Capsella rubella
Ca_09410_v3 Cicer arietinum L.
CBR_g2743 Chara braunii
Cc02_g31820 Coffea canephora
CDE10G0245 Ceratophyllum demersum
Cfa006453 Carpinus fangiana
Cfa027249 Carpinus fangiana
Ciclev10001991m.g Citrus clementina
CiPaw.07G064700 Carya illinoinensis
ClCG02G016480 Citrullus lanatus
COL.COLO4_15298 Corchorus olitorius
Cpa.g.sc117.71 Carica papaya
Cre13.g579950 Chlamydomonas reinhardtii
CsaV3_2G004290 Cucumis sativus L.
CSS0008105 Camellia sinensis var. sinensis
CSS0028825 Camellia sinensis var. sinensis
DCAR_029537 Daucus carota
Dinv00306 Davidia involucrata
Dinv11531 Davidia involucrata
Dinv17770 Davidia involucrata
Duzib106G0883 Durio zibethinus
Duzib128G0953 Durio zibethinus
Duzib177G0375 Durio zibethinus
ECA232G2012 Erigeron canadensis
EL10Ac8g19247 Beta vulgaris
Eucgr.B01695 Eucalyptus grandis
FAN02G1055 Fragaria x ananassa
FAN05G0551 Fragaria x ananassa
FAN05G3160 Fragaria x ananassa
FAN14G0561 Fragaria x ananassa
FvH4_6g03340 Fragaria vesca
Glyma.03G245800 Glycine max
Glyma.19G243300 Glycine max
Gohir.A08G214400 Gossypium hirsutum
Gohir.A11G254300 Gossypium hirsutum
Gohir.D08G231400 Gossypium hirsutum
Gohir.D11G264100 Gossypium hirsutum
Gorai.004G245800 Gossypium raimondii
Gorai.007G284100 Gossypium raimondii
GSVIVG01021835001 Vitis vinifera
HanXRQChr08g0230031 Helianthus annuus
HanXRQChr11g0340961 Helianthus annuus
HanXRQChr13g0394071 Helianthus annuus
Haze_04338 Corylus avellana
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla
HPP92_025859 Vanilla planifolia
Hund22124 Selenicereus undatus
Lalb_Chr15g0076861 Lupinus albus
Lalb_Chr18g0045051 Lupinus albus
Lj1g0006589 Lotus japonicus
Lj9A668T37 Lonicera japonica
Lj9C665G12 Lonicera japonica
Lj9C665T13 Lonicera japonica
Lj9C668G11 Lonicera japonica
Lsat_1_v5_gn_1_96700 Lactuca sativa
Manes.08G132100 Manihot esculenta
Manes.09G154700 Manihot esculenta
Mapoly0010s0190 Marchantia polymorpha
MBI11_g10323_MAGBIO Magnolia biondii
MCO08G289 Micromonas commoda
MD04G1221600 Malus domestica
MD12G1237600 Malus domestica
Medtr7g114810 Medicago truncatula
MELO3C004366.2 Cucumis melo
Migut.O00800 Erythranthe guttata
MSTRG.5093 Avicennia marina
Nitab4.5_0005441g0010 Nicotiana tabacum
Nitab4.5_0005729g0050 Nicotiana tabacum
Nn1g02409 Nelumbo nucifera
Oeu045907.1 Olea europaea
Os02g0127000 Oryza sativa ssp. japonica
Peaxi162Scf01049g00037 Petunia axillaris
PGR083G2383 Punica granatum
PGSC0003DMG400022512 Solanum tuberosum
Phvul.006G100100 Phaseolus vulgaris
Potri.005G051300 Populus trichocarpa
Potri.013G038501 Populus trichocarpa
Potri.013G038700 Populus trichocarpa
Pp3c22_11510 Physcomitrium patens
PRCOL_00003723 Prasinoderma coloniale
Prupe.6G340800 Prunus persica
Psat3g008080 Pisum sativum
PSO210G7536 Papaver somniferum
PSO832G3279 Papaver somniferum
QL03p024856 Quercus lobata
RcHm_v2.0_Chr3g0451841 Rosa chinensis
RcHm_v2.0_Chr5g0051541 Rosa chinensis
RcHm_v2.0_Chr6g0244381 Rosa chinensis
RcHm_v2.0_Chr7g0229041 Rosa chinensis
Rhsim05G0160800 Rhododendron simsii
Rhsim05G0161200 Rhododendron simsii
Sabra05G0045300 Salix brachista
Sabra13G0036200 Salix brachista
SalBow4G2463 Salvia bowleyana
SalBow4G3027 Salvia bowleyana
Sc09g0003820 Simmondsia chinensis
Sed0015548 Sechium edule
Sed0026396 Sechium edule
SEGI_22763 Sequoiadendron giganteum
SGA_v2.0_scaffold196G40974 Striga asiatica
SGA_v2.0_scaffold43G16266 Striga asiatica
SHI18353 Sapria himalayana
SMO351G0459 Selaginella moellendorffii
Solyc01g097740.3 Solanum lycopersicum
Sopen01g041350 Solanum pennellii
Sp3g03660 Schrenkiella parvula
TAR362G0361 Trochodendron aralioides
TAR365G0624 Trochodendron aralioides
THA.LOC104818641 Tarenaya hassleriana
THA.LOC104821680 Tarenaya hassleriana
Thecc.05G287400 Theobroma cacao
Thhalv10004492m.g Eutrema salsugineum
Thhalv10021217m.g Eutrema salsugineum
TPR.G31876 Trifolium pratense
TPR.G6984 Trifolium pratense
TWI12G0865 Tripterygium wilfordii
TWI56G0949 Tripterygium wilfordii
unitig_0.g2302 Utricularia gibba
vmacro21326 Vaccinium macrocarpon
vmacro21412 Vaccinium macrocarpon
VMungo0540G1874 Vigna mungo
Zm00001eb064390 Zea mays
Zm00001eb210860 Zea mays

User provided reference genes

Program Settings