Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZYH6JG Arachis hypogaea HOM05D006424 ORTHO05D007945 2.8e-27 124.4 57 100.0
RcHm_v2.0_Chr2g0135411 Rosa chinensis HOM05D006424 ORTHO05D007945 4.8e-19 97.1 54 81.5
FAN02G1519 Fragaria x ananassa HOM05D006424 ORTHO05D007945 6.3e-19 96.7 55 80.0
CANSAT56G3050 Cannabis sativa HOM05D006424 ORTHO05D007945 1.1e-18 95.9 56 76.8
Sabra01G0157400 Salix brachista HOM05D006424 ORTHO05D007945 1.8e-18 95.1 56 76.8
AUR62011520 Chenopodium quinoa HOM05D006424 ORTHO05D007945 2.4e-18 94.7 55 74.5
CSS0015595 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 4.1e-18 94.0 56 75.0
CSS0035863 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 4.1e-18 94.0 56 75.0
AUR62016338 Chenopodium quinoa HOM05D006424 ORTHO05D007945 4.1e-18 94.0 55 74.5
FAN05G3690 Fragaria x ananassa HOM05D006424 ORTHO05D007945 4.1e-18 94.0 55 78.2
FAN09G3401 Fragaria x ananassa HOM05D006424 ORTHO05D007945 4.1e-18 94.0 55 78.2
FAN14G0356 Fragaria x ananassa HOM05D006424 ORTHO05D007945 4.1e-18 94.0 55 78.2
CsaV3_7G032330 Cucumis sativus L. HOM05D006424 ORTHO05D007945 5.3e-18 93.6 55 76.4
MD17G1212100 Malus domestica HOM05D006424 ORTHO05D007945 5.3e-18 93.6 55 78.2
MELO3C023426.2 Cucumis melo HOM05D006424 ORTHO05D007945 6.9e-18 93.2 55 74.5
PGR102G1391 Punica granatum HOM05D006424 ORTHO05D007945 6.9e-18 93.2 56 73.2
Actinidia15982 Actinidia chinensis HOM05D006424 ORTHO05D007945 9.0e-18 92.8 56 75.0
ClCG09G002940 Citrullus lanatus HOM05D006424 ORTHO05D007945 9.0e-18 92.8 56 73.2
FvH4_6g29710 Fragaria vesca HOM05D006424 ORTHO05D007945 1.2e-17 92.4 55 76.4
Hma1.2p1_0042F.1_g025600 Hydrangea macrophylla HOM05D006424 ORTHO05D007945 1.2e-17 92.4 56 73.2
COL.COLO4_11949 Corchorus olitorius HOM05D006424 ORTHO05D007945 2.0e-17 91.7 55 74.5
Lalb_Chr04g0262371 Lupinus albus HOM05D006424 ORTHO05D007945 2.0e-17 91.7 56 73.2
Potri.001G204300 Populus trichocarpa HOM05D006424 ORTHO05D007945 2.0e-17 91.7 56 73.2
Sed0012965 Sechium edule HOM05D006424 ORTHO05D007945 2.0e-17 91.7 56 71.4
Cpa.g.sc10.267 Carica papaya HOM05D006424 ORTHO05D007945 2.6e-17 91.3 56 71.4
Thhalv10022443m.g Eutrema salsugineum HOM05D006424 ORTHO05D007945 2.6e-17 91.3 55 72.7
Gohir.A06G185600 Gossypium hirsutum HOM05D006424 ORTHO05D007945 2.6e-17 91.3 56 71.4
Gohir.D06G192200 Gossypium hirsutum HOM05D006424 ORTHO05D007945 2.6e-17 91.3 56 71.4
Gorai.010G225400 Gossypium raimondii HOM05D006424 ORTHO05D007945 2.6e-17 91.3 56 71.4
Eucgr.F03876 Eucalyptus grandis HOM05D006424 ORTHO05D007945 3.4e-17 90.9 55 72.7
Lj9A500T81 Lonicera japonica HOM05D006424 ORTHO05D007945 3.4e-17 90.9 55 70.9
Manes.11G056800 Manihot esculenta HOM05D006424 ORTHO05D007945 3.4e-17 90.9 56 71.4
Prupe.3G087300 Prunus persica HOM05D006424 ORTHO05D007945 3.4e-17 90.9 54 77.8
Ah.01g020600 Amaranthus hybridus HOM05D006424 ORTHO05D007945 4.5e-17 90.5 55 70.9
GSVIVG01017340001 Vitis vinifera HOM05D006424 ORTHO05D007945 4.5e-17 90.5 55 72.7
Atru.chr1.2950 Acer truncatum HOM05D006424 ORTHO05D007945 5.9e-17 90.1 56 69.6
Actinidia08796 Actinidia chinensis HOM05D006424 ORTHO05D007945 5.9e-17 90.1 56 73.2
Nn2g12084 Nelumbo nucifera HOM05D006424 ORTHO05D007945 5.9e-17 90.1 55 70.9
BcaC05g28929 Brassica carinata HOM05D006424 ORTHO05D007945 7.6e-17 89.7 55 72.7
A05p33570 Brassica napus HOM05D006424 ORTHO05D007945 7.6e-17 89.7 55 72.7
C05p50560 Brassica napus HOM05D006424 ORTHO05D007945 7.6e-17 89.7 55 72.7
BolC5t33801H Brassica oleracea HOM05D006424 ORTHO05D007945 7.6e-17 89.7 55 72.7
BraA05t22180Z Brassica rapa HOM05D006424 ORTHO05D007945 7.6e-17 89.7 55 72.7
Medtr4g010140 Medicago truncatula HOM05D006424 ORTHO05D007945 7.6e-17 89.7 56 73.2
AT3G15840 Arabidopsis thaliana HOM05D006424 ORTHO05D007945 1.0e-16 89.4 55 74.5
A03p39490 Brassica napus HOM05D006424 ORTHO05D007945 1.0e-16 89.4 55 72.7
BraA03t13099Z Brassica rapa HOM05D006424 ORTHO05D007945 1.0e-16 89.4 55 72.7
Glyma.08G213000 Glycine max HOM05D006424 ORTHO05D007945 1.0e-16 89.4 56 71.4
THA.LOC104810510 Tarenaya hassleriana HOM05D006424 ORTHO05D007945 1.0e-16 89.4 56 71.4
BcaB06g25691 Brassica carinata HOM05D006424 ORTHO05D007945 1.3e-16 89.0 54 74.1
Glyma.07G029900 Glycine max HOM05D006424 ORTHO05D007945 1.3e-16 89.0 56 69.6
Manes.04G112700 Manihot esculenta HOM05D006424 ORTHO05D007945 1.3e-16 89.0 56 69.6
CARHR090930 Cardamine hirsuta HOM05D006424 ORTHO05D007945 1.7e-16 88.6 55 72.7
Duzib192G0907 Durio zibethinus HOM05D006424 ORTHO05D007945 1.7e-16 88.6 56 67.9
Nn8g39504 Nelumbo nucifera HOM05D006424 ORTHO05D007945 2.2e-16 88.2 56 67.9
Phvul.010G156300 Phaseolus vulgaris HOM05D006424 ORTHO05D007945 2.2e-16 88.2 56 69.6
QL05p029818 Quercus lobata HOM05D006424 ORTHO05D007945 2.2e-16 88.2 55 67.3
DCAR_021344 Daucus carota HOM05D006424 ORTHO05D007945 2.9e-16 87.8 55 69.1
Lj3g0018478 Lotus japonicus HOM05D006424 ORTHO05D007945 2.9e-16 87.8 56 71.4
MBI04_g29330_MAGBIO Magnolia biondii HOM05D006424 ORTHO05D007945 2.9e-16 87.8 56 66.1
Sp3g14150 Schrenkiella parvula HOM05D006424 ORTHO05D007945 2.9e-16 87.8 55 70.9
Ca_20445_v3 Cicer arietinum L. HOM05D006424 ORTHO05D007945 3.8e-16 87.4 55 72.7
Cc04_g04390 Coffea canephora HOM05D006424 ORTHO05D007945 3.8e-16 87.4 55 72.7
Oeu039429.1 Olea europaea HOM05D006424 ORTHO05D007945 3.8e-16 87.4 55 69.1
VMungo0331G1912 Vigna mungo HOM05D006424 ORTHO05D007945 3.8e-16 87.4 56 67.9
Cfa001961 Carpinus fangiana HOM05D006424 ORTHO05D007945 5.0e-16 87.0 56 67.9
BcaC01g03854 Brassica carinata HOM05D006424 ORTHO05D007945 6.5e-16 86.7 55 70.9
MSTRG.22746 Avicennia marina HOM05D006424 ORTHO05D007945 8.5e-16 86.3 55 67.3
C03p47890 Brassica napus HOM05D006424 ORTHO05D007945 8.5e-16 86.3 55 70.9
Carub.0003s1558 Capsella rubella HOM05D006424 ORTHO05D007945 8.5e-16 86.3 55 70.9
PGSC0003DMG402028626 Solanum tuberosum HOM05D006424 ORTHO05D007945 8.5e-16 86.3 55 69.1
TPR.G38617 Trifolium pratense HOM05D001630 ORTHO05D007945 8.5e-16 86.3 55 70.9
AL3G28500 Arabidopsis lyrata HOM05D006424 ORTHO05D007945 1.1e-15 85.9 55 70.9
Peaxi162Scf00034g01413 Petunia axillaris HOM05D006424 ORTHO05D007945 1.1e-15 85.9 55 67.3
TAR383G1051 Trochodendron aralioides HOM05D006424 ORTHO05D007945 1.1e-15 85.9 56 71.4
vmacro16897 Vaccinium macrocarpon HOM05D006424 ORTHO05D007945 1.4e-15 85.5 55 67.3
Aa31LG8G3030 Aethionema arabicum HOM05D006424 ORTHO05D007945 1.9e-15 85.1 56 67.9
Nitab4.5_0009497g0010 Nicotiana tabacum HOM05D006424 ORTHO05D007945 2.5e-15 84.7 55 69.1
Aqoxy7G03662 Aquilegia oxysepala HOM05D006424 ORTHO05D007945 3.2e-15 84.3 55 67.3
CAN.G47.13 Capsicum annuum HOM05D006424 ORTHO05D007945 3.2e-15 84.3 55 65.5
Solyc12g042770.3 Solanum lycopersicum HOM05D006424 ORTHO05D007945 3.2e-15 84.3 56 64.3
Sopen12g021950 Solanum pennellii HOM05D006424 ORTHO05D007945 4.2e-15 84.0 55 65.5
Rhsim12G0191200 Rhododendron simsii HOM05D006424 ORTHO05D007945 7.2e-15 83.2 55 67.3
Hund06560 Selenicereus undatus HOM05D006424 ORTHO05D007945 7.2e-15 83.2 55 70.9
CiPaw.02G157300 Carya illinoinensis HOM05D006424 ORTHO05D007945 9.3e-15 82.8 56 62.5
Thecc.06G024200 Theobroma cacao HOM05D006424 ORTHO05D007945 9.3e-15 82.8 53 67.9
PSO210G3245 Papaver somniferum HOM05D006424 ORTHO05D007945 1.2e-14 82.4 54 64.8
Ciclev10026222m.g Citrus clementina HOM05D006424 ORTHO05D007945 1.6e-14 82.0 55 63.6
Migut.I00764 Erythranthe guttata HOM05D006424 ORTHO05D007945 1.6e-14 82.0 55 67.3
HanXRQChr04g0097881 Helianthus annuus HOM05D006424 ORTHO05D007945 2.1e-14 81.6 54 64.8
Lsat_1_v5_gn_1_34401 Lactuca sativa HOM05D006424 ORTHO05D007945 2.1e-14 81.6 54 64.8
CiPaw.01G248200 Carya illinoinensis HOM05D006424 ORTHO05D007945 2.7e-14 81.3 56 62.5
TWI12G0141 Tripterygium wilfordii HOM05D006424 ORTHO05D007945 2.7e-14 81.3 52 69.2
ECA247G2617 Erigeron canadensis HOM05D006424 ORTHO05D007945 3.6e-14 80.9 54 63.0
Thecc.K0004600 Theobroma cacao HOM05D006424 ORTHO05D007945 6.1e-14 80.1 53 66.0
CDE07G1654 Ceratophyllum demersum HOM05D006424 ORTHO05D007945 2.3e-13 78.2 54 64.8
PSO210G5365 Papaver somniferum HOM05D006424 ORTHO05D007945 3.9e-13 77.4 54 63.0
ATR0322G065 Amborella trichopoda HOM05D006424 ORTHO05D007945 6.7e-13 76.6 55 58.2
Haze_16559 Corylus avellana HOM05D006424 ORTHO05D007945 8.8e-13 76.3 77 51.9
Zm00001eb049190 Zea mays HOM05D006424 ORTHO05D007945 3.3e-12 74.3 55 56.4
Os03g0586500 Oryza sativa ssp. japonica HOM05D006424 ORTHO05D007945 4.3e-12 73.9 55 56.4
unitig_27.g24949 Utricularia gibba HOM05D006424 ORTHO05D007945 5.7e-12 73.6 54 64.8
Zm00001eb219530 Zea mays HOM05D006424 ORTHO05D007945 1.7e-11 72.0 55 54.5
BolC3t17067H Brassica oleracea HOM05D006424 ORTHO05D007945 4.8e-11 70.5 81 46.9
CBR_g38381 Chara braunii HOM05D006424 ORTHO05D007945 2.4e-10 68.2 54 57.4
SMO331G0083 Selaginella moellendorffii HOM05D006424 ORTHO05D007945 5.3e-10 67.0 54 55.6
arahy.Tifrunner.gnm1.ann1.92ZGJC Arachis hypogaea HOM05D006424 ORTHO05D007945 4.5e-09 63.9 62 54.8
AagrBONN_evm.TU.Sc2ySwM_344.5484 Anthoceros agrestis HOM05D006424 ORTHO05D007945 7.7e-09 63.2 54 51.9
Mapoly0024s0088 Marchantia polymorpha HOM05D006424 ORTHO05D007945 2.9e-08 61.2 54 46.3
Pp3c15_11500 Physcomitrium patens HOM05D006424 ORTHO05D007945 9.4e-07 56.2 53 47.2
Nitab4.5_0003157g0020 Nicotiana tabacum HOM05D006424 ORTHO05D007945 3.6e-06 54.3 55 52.7


User provided reference genes

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