Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 0.0e+00 1606.3 909 100.0
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 0.0e+00 1411.7 911 91.3
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 5.1e-179 632.5 938 51.0
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 9.2e-165 585.1 973 48.8
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 9.6e-162 575.1 951 47.8
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 6.2e-153 545.8 881 46.8
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.4e-149 534.6 947 45.2
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 9.0e-144 515.4 947 46.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.7e-140 503.8 922 43.6
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.0e-139 501.9 937 44.0
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 2.0e-127 461.1 955 40.6
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.7e-121 441.4 998 40.7
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-117 428.3 924 39.6
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 3.2e-117 427.2 932 39.5
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 8.0e-100 369.4 267 81.6
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 3.0e-99 367.5 1046 34.8
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.4e-88 332.0 971 34.2
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 1.8e-88 331.6 967 34.5
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 4.5e-79 300.4 984 33.3
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 2.8e-76 291.2 981 33.0
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.0e-76 289.7 927 32.4
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.4e-75 288.9 1038 32.1
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 2.0e-74 285.0 965 33.5
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 8.3e-73 279.6 980 34.0
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 2.4e-72 278.1 982 32.0
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 4.1e-72 277.3 366 51.1
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 8.6e-70 269.6 940 31.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.5e-69 268.1 948 31.0
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.0e-68 263.1 936 30.9
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 4.0e-67 260.8 937 31.1
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 6.4e-65 253.4 969 30.4
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 8.3e-65 253.1 931 33.7
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.1e-63 248.4 929 31.2
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.4e-59 235.7 935 29.8
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-54 219.5 969 29.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.0e-54 219.5 974 30.0
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.3e-54 219.2 974 30.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 3.9e-54 217.6 975 30.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.9e-53 215.3 979 30.2
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.5e-53 214.9 983 29.7
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 4.3e-53 214.2 919 29.9
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 4.3e-53 214.2 973 29.7
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 3.6e-52 211.1 924 31.6
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 8.1e-52 209.9 953 29.8
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.4e-51 208.4 951 29.7
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.2e-50 206.1 971 31.0
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.0e-50 205.3 983 28.4
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 4.4e-50 204.1 952 29.8
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 4.9e-49 200.7 950 30.4
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.4e-48 198.4 982 31.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 5.4e-48 197.2 948 30.5
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.2e-47 196.1 972 28.4
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.6e-47 195.7 317 47.0
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 3.9e-46 191.0 966 28.1
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.9e-46 191.0 940 29.6
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 8.7e-46 189.9 932 28.4
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.6e-44 185.7 926 30.6
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 1.1e-43 183.0 982 27.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 5.3e-43 180.6 1006 26.9
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.4e-42 177.6 942 29.4
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.2e-41 175.3 943 30.2
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 1.2e-39 169.5 934 27.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 3.9e-38 164.5 961 27.6
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 8.7e-38 163.3 950 26.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.9e-37 162.2 971 29.6
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.5e-37 161.8 922 29.8
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.6e-36 157.9 916 27.2
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 4.8e-36 157.5 954 28.7
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 8.1e-36 156.8 956 27.8
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.8e-35 155.6 924 25.4
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.8e-35 155.6 862 27.3
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.3e-35 154.1 939 29.6
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 6.9e-35 153.7 964 28.9
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.2e-34 152.9 349 36.7
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.2e-34 152.9 962 27.1
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.2e-33 148.7 918 27.6
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 6.4e-33 147.1 968 26.9
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-31 142.5 463 34.1
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.6e-31 142.5 1006 27.7
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.6e-31 141.0 944 26.8
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 7.9e-31 140.2 1027 27.4
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.9e-30 137.9 953 28.2
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.1e-29 136.3 976 26.9
arahy.Tifrunner.gnm1.ann1.Z9P2D3 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.1e-27 129.8 145 57.9
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.0e-25 123.2 891 26.2
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.8e-25 121.3 158 52.5
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.2e-24 117.9 201 45.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 2.7e-23 115.2 954 23.7
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 7.9e-23 113.6 1001 24.3
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.3e-22 112.8 980 26.0
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.1e-22 110.9 940 25.1
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.1e-22 110.9 940 25.1
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 4.3e-21 107.8 998 25.1
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 4.3e-21 107.8 982 26.5
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 9.6e-21 106.7 855 26.3
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.3e-20 106.3 177 45.2
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.6e-20 105.9 569 26.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.1e-20 105.5 896 25.8
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.1e-20 105.5 852 27.1
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.7e-20 104.8 920 26.5
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.1e-19 103.2 825 26.3
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.1e-19 103.2 950 27.5
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 4.1e-19 101.3 930 24.2
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 5.3e-19 100.9 825 25.9
arahy.Tifrunner.gnm1.ann1.L3UHBM Arachis hypogaea HOM05D004628 ORTHO05D005166 4.5e-18 97.8 88 65.9
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.7e-17 95.9 822 25.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.9e-17 95.1 79 62.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 5.0e-17 94.4 941 24.0
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 2.5e-16 92.0 559 28.1
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 4.2e-16 91.3 553 26.4
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 5.5e-16 90.9 936 23.9
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 5.5e-16 90.9 587 25.4
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 7.2e-16 90.5 929 25.3
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 7.2e-16 90.5 980 25.5
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 2.7e-15 88.6 925 25.9
Psat7g034040 Pisum sativum HOM05D000070 ORTHO05D007395 3.5e-15 88.2 122 53.3
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.5e-15 88.2 944 25.8
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 1.0e-14 86.7 178 41.6
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.5e-13 82.8 163 40.5
Psat2g146240 Pisum sativum HOM05D004628 ORTHO05D005166 2.5e-13 82.0 182 39.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 7.4e-13 80.5 925 25.4
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 7.4e-13 80.5 892 24.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.3e-12 79.7 917 23.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.3e-12 79.7 961 24.1
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 1.4e-11 76.3 247 32.8
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 2.4e-11 75.5 939 23.6
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.1e-11 74.7 65 58.5
Psat3g068120 Pisum sativum HOM05D000847 ORTHO05D002691 5.3e-11 74.3 116 43.1
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 9.0e-11 73.6 950 23.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.5e-10 72.8 925 24.0
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.4e-10 71.6 119 46.2
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 3.4e-10 71.6 905 22.3
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 7.7e-10 70.5 967 26.0
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.3e-09 69.7 966 23.5
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 2.2e-09 68.9 935 23.0
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.9e-08 65.9 95 51.6
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 9.4e-08 63.5 119 40.3
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.2e-07 63.2 944 23.8
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 3.6e-07 61.6 239 29.3
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 7.9e-07 60.5 84 47.6
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 7.9e-07 60.5 165 37.6
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.0e-06 60.1 86 44.2
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.8e-06 59.3 442 26.7
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.3e-06 58.9 75 54.7
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.1e-06 57.8 103 44.7


User provided reference genes

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