Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HZW4N6 Arachis hypogaea HOM05D001686 ORTHO05D001645 1.8e-159 565.8 286 100.0
arahy.Tifrunner.gnm1.ann1.ZYX06Z Arachis hypogaea HOM05D001686 ORTHO05D001645 1.4e-106 390.2 239 83.7
arahy.Tifrunner.gnm1.ann1.5D2PRQ Arachis hypogaea HOM05D001686 ORTHO05D001645 6.8e-106 387.9 239 83.3
Glyma.04G068800 Glycine max HOM05D001686 ORTHO05D001645 1.1e-60 237.7 226 59.7
Glyma.06G070400 Glycine max HOM05D001686 ORTHO05D001645 4.5e-57 225.7 230 56.1
Phvul.009G095200 Phaseolus vulgaris HOM05D001686 ORTHO05D001645 1.9e-55 220.3 182 61.5
VMungo1309G3076 Vigna mungo HOM05D001686 ORTHO05D001645 8.7e-53 211.5 240 52.1
TPR.G31768 Trifolium pratense HOM05D001686 ORTHO05D001645 5.9e-41 172.2 238 48.3
Lj1g0008840 Lotus japonicus HOM05D001686 ORTHO05D001645 1.5e-36 157.5 211 46.9
Dinv30178 Davidia involucrata HOM05D001686 ORTHO05D001645 6.3e-35 152.1 190 47.9
Medtr3g107680 Medicago truncatula HOM05D001686 ORTHO05D001645 4.1e-34 149.4 250 42.4
Ca_15726_v3 Cicer arietinum L. HOM05D001686 ORTHO05D001645 1.9e-31 140.6 185 49.7
QL02p022765 Quercus lobata HOM05D001686 ORTHO05D001645 2.5e-31 140.2 215 42.3
arahy.Tifrunner.gnm1.ann1.TC1WQ3 Arachis hypogaea HOM05D001686 ORTHO05D001645 4.2e-31 139.4 129 62.8
Haze_21572 Corylus avellana HOM05D001686 ORTHO05D001645 7.2e-31 138.7 217 42.9
Cfa013182 Carpinus fangiana HOM05D001686 ORTHO05D001645 1.6e-30 137.5 215 43.3
Psat0ss3186g0120 Pisum sativum HOM05D001686 ORTHO05D001645 4.7e-30 136.0 254 40.2
Prupe.1G473100 Prunus persica HOM05D001686 ORTHO05D001645 1.8e-29 134.0 195 43.6
Actinidia15688 Actinidia chinensis HOM05D001686 ORTHO05D001645 4.0e-29 132.9 189 42.9
QL02p022975 Quercus lobata HOM05D001686 ORTHO05D001645 3.3e-28 129.8 190 42.1
CSS0038409 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 7.5e-28 128.6 182 41.8
CSS0033015 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 1.3e-27 127.9 189 42.3
QL02p022791 Quercus lobata HOM05D001686 ORTHO05D001645 1.3e-27 127.9 190 41.6
RcHm_v2.0_Chr6g0298631 Rosa chinensis HOM05D001686 ORTHO05D001645 1.3e-27 127.9 204 39.7
CiPaw.08G013400 Carya illinoinensis HOM05D001686 ORTHO05D001645 4.1e-26 122.9 187 41.7
Atru.chr7.2373 Acer truncatum HOM05D001686 ORTHO05D001645 9.1e-26 121.7 269 36.8
Oeu015830.1 Olea europaea HOM05D001686 ORTHO05D001645 1.2e-25 121.3 197 38.1
Lj7A718T64 Lonicera japonica HOM05D001686 ORTHO05D001645 2.0e-25 120.6 263 35.4
Migut.E01477 Erythranthe guttata HOM05D001686 ORTHO05D001645 8.5e-24 115.2 190 40.5
Cpa.g.sc427.1 Carica papaya HOM05D001686 ORTHO05D001645 2.5e-23 113.6 206 37.9
Hma1.2p1_0007F.1_g005120 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 2.5e-23 113.6 278 33.1
Potri.006G250600 Populus trichocarpa HOM05D001686 ORTHO05D001645 3.2e-23 113.2 184 41.8
Rhsim02G0194400 Rhododendron simsii HOM05D001686 ORTHO05D001645 4.2e-23 112.8 181 39.8
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.1e-22 110.5 202 37.1
MSTRG.25854 Avicennia marina HOM05D001686 ORTHO05D001645 2.7e-22 110.2 189 37.0
FAN27G3157 Fragaria x ananassa HOM05D001686 ORTHO05D001645 2.7e-22 110.2 202 37.1
Lj8C620G6 Lonicera japonica HOM05D001686 ORTHO05D001645 6.1e-22 109.0 209 35.9
TAR625G0862 Trochodendron aralioides HOM05D001686 ORTHO05D001645 1.4e-21 107.8 200 36.5
FvH4_2g29660 Fragaria vesca HOM05D001686 ORTHO05D001645 2.3e-21 107.1 212 36.8
FAN24G1163 Fragaria x ananassa HOM05D001686 ORTHO05D001645 2.3e-21 107.1 204 36.8
MSTRG.1638 Avicennia marina HOM05D001686 ORTHO05D001645 4.0e-21 106.3 186 39.2
DCAR_006237 Daucus carota HOM05D001686 ORTHO05D001645 4.0e-21 106.3 194 34.5
Hma1.2p1_0000F.1_g000790 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 4.0e-21 106.3 191 38.7
RcHm_v2.0_Chr7g0226201 Rosa chinensis HOM05D001686 ORTHO05D001645 4.0e-21 106.3 261 33.3
DCAR_022880 Daucus carota HOM05D001686 ORTHO05D001645 6.8e-21 105.5 277 34.3
Oeu015826.1 Olea europaea HOM05D001686 ORTHO05D001645 6.8e-21 105.5 181 35.9
Potri.018G030500 Populus trichocarpa HOM05D001686 ORTHO05D001645 1.5e-20 104.4 185 40.5
SalBow8G2744 Salvia bowleyana HOM05D001686 ORTHO05D001645 2.6e-20 103.6 188 36.7
Ciclev10010442m.g Citrus clementina HOM05D001686 ORTHO05D001645 3.4e-20 103.2 265 32.5
Cfa003338 Carpinus fangiana HOM05D001686 ORTHO05D001645 9.8e-20 101.7 200 35.0
TAR636G2494 Trochodendron aralioides HOM05D001686 ORTHO05D001645 1.3e-19 101.3 247 33.6
Nitab4.5_0000151g0210 Nicotiana tabacum HOM05D001686 ORTHO05D001645 8.3e-19 98.6 194 34.0
Nitab4.5_0008089g0020 Nicotiana tabacum HOM05D001686 ORTHO05D001645 2.4e-18 97.1 194 34.0
Eucgr.C01790 Eucalyptus grandis HOM05D001686 ORTHO05D001645 4.1e-18 96.3 184 39.1
Haze_25620 Corylus avellana HOM05D001686 ORTHO05D001645 9.1e-18 95.1 200 33.5
GSVIVG01035806001 Vitis vinifera HOM05D001686 ORTHO05D001645 1.6e-17 94.4 191 36.1
Nitab4.5_0001669g0100 Nicotiana tabacum HOM05D001686 ORTHO05D001645 2.7e-17 93.6 191 34.0
QL02p087418 Quercus lobata HOM05D001686 ORTHO05D001645 5.9e-17 92.4 196 36.2
arahy.Tifrunner.gnm1.ann1.BDT0Y3 Arachis hypogaea HOM05D001686 ORTHO05D001645 1.0e-16 91.7 92 57.6
Medtr3g107700 Medicago truncatula HOM05D001686 ORTHO05D001645 2.9e-16 90.1 206 38.8
Nn2g11935 Nelumbo nucifera HOM05D001686 ORTHO05D001645 3.8e-16 89.7 272 32.0
SalBow4G0109 Salvia bowleyana HOM05D001686 ORTHO05D001645 8.5e-16 88.6 201 31.8
Migut.A00312 Erythranthe guttata HOM05D001686 ORTHO05D001645 1.5e-15 87.8 203 32.0
Glyma.05G010000 Glycine max HOM05D001686 ORTHO05D001645 3.2e-15 86.7 238 31.9
Nitab4.5_0005390g0070 Nicotiana tabacum HOM05D001686 ORTHO05D001645 4.2e-15 86.3 158 39.2
Peaxi162Scf00341g00619 Petunia axillaris HOM05D001686 ORTHO05D001645 4.2e-15 86.3 198 34.3
Oeu020097.1 Olea europaea HOM05D001686 ORTHO05D001645 5.5e-15 85.9 248 30.6
Peaxi162Scf00244g01122 Petunia axillaris HOM05D001686 ORTHO05D001645 7.2e-15 85.5 159 39.6
CAN.G534.18 Capsicum annuum HOM05D001686 ORTHO05D001645 1.2e-14 84.7 164 36.0
Nitab4.5_0002882g0030 Nicotiana tabacum HOM05D001686 ORTHO05D001645 1.2e-14 84.7 187 31.6
Cc11_g01790 Coffea canephora HOM05D001686 ORTHO05D001645 2.1e-14 84.0 205 33.7
Sopen11g003230 Solanum pennellii HOM05D001686 ORTHO05D001645 2.1e-14 84.0 176 35.8
PGSC0003DMG400019480 Solanum tuberosum HOM05D001686 ORTHO05D001645 2.1e-14 84.0 164 37.8
VMungo1215G2594 Vigna mungo HOM05D001686 ORTHO05D001645 2.8e-14 83.6 188 35.1
Gorai.010G065700 Gossypium raimondii HOM05D001686 ORTHO05D001645 3.6e-14 83.2 167 36.5
Thecc.09G120900 Theobroma cacao HOM05D001686 ORTHO05D001645 3.6e-14 83.2 167 35.9
Manes.14G129100 Manihot esculenta HOM05D001686 ORTHO05D001645 4.7e-14 82.8 248 31.5
Duzib187G1690 Durio zibethinus HOM05D001686 ORTHO05D001645 6.1e-14 82.4 145 37.2
CSS0031518 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 1.0e-13 81.6 202 31.2
COL.COLO4_03604 Corchorus olitorius HOM05D001686 ORTHO05D001645 1.4e-13 81.3 270 30.7
Gohir.A06G057800 Gossypium hirsutum HOM05D001686 ORTHO05D001645 1.4e-13 81.3 167 35.9
Sabra18G0032100 Salix brachista HOM05D001686 ORTHO05D001645 1.4e-13 81.3 185 34.6
Ca_21706_v3 Cicer arietinum L. HOM05D001686 ORTHO05D001645 2.3e-13 80.5 218 33.0
AUR62011070 Chenopodium quinoa HOM05D001686 ORTHO05D001645 3.0e-13 80.1 186 31.7
Nitab4.5_0000962g0050 Nicotiana tabacum HOM05D001686 ORTHO05D001645 3.0e-13 80.1 160 38.1
Sc18g0000830 Simmondsia chinensis HOM05D001686 ORTHO05D001645 3.0e-13 80.1 144 35.4
CSS0030484 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 4.0e-13 79.7 202 30.7
TPR.G10689 Trifolium pratense HOM05D001686 ORTHO05D001645 4.0e-13 79.7 187 33.2
Ciclev10008447m.g Citrus clementina HOM05D001686 ORTHO05D001645 5.2e-13 79.3 209 32.5
Cc06_g08940 Coffea canephora HOM05D001686 ORTHO05D001645 5.2e-13 79.3 209 32.5
CSS0011180 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 6.8e-13 79.0 248 29.8
CSS0029076 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 6.8e-13 79.0 202 30.7
Duzib168G1762 Durio zibethinus HOM05D001686 ORTHO05D001645 8.8e-13 78.6 167 34.1
Prupe.7G238100 Prunus persica HOM05D001686 ORTHO05D001645 8.8e-13 78.6 195 34.4
Hma1.2p1_0018F.1_g012790 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 1.2e-12 78.2 193 33.7
CSS0029915 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 1.5e-12 77.8 200 32.0
Lalb_Chr07g0178741 Lupinus albus HOM05D001686 ORTHO05D001645 1.5e-12 77.8 250 31.2
Gohir.A10G076800 Gossypium hirsutum HOM05D001686 ORTHO05D001645 2.0e-12 77.4 175 33.1
CSS0015643 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 2.6e-12 77.0 248 29.4
Peaxi162Scf00004g00027 Petunia axillaris HOM05D001686 ORTHO05D001645 2.6e-12 77.0 160 37.5
Rhsim01G0078500 Rhododendron simsii HOM05D001686 ORTHO05D001645 2.6e-12 77.0 176 34.1
CARHR240360 Cardamine hirsuta HOM05D001686 ORTHO05D001645 4.4e-12 76.3 188 34.0
Gohir.D10G074500 Gossypium hirsutum HOM05D001686 ORTHO05D001645 4.4e-12 76.3 172 33.1
PGSC0003DMG400023489 Solanum tuberosum HOM05D001686 ORTHO05D001645 4.4e-12 76.3 156 35.9
EL10Ac8g18591 Beta vulgaris HOM05D001686 ORTHO05D001645 5.7e-12 75.9 147 35.4
Gorai.011G080400 Gossypium raimondii HOM05D001686 ORTHO05D001645 7.5e-12 75.5 172 32.6
Potri.001G173900 Populus trichocarpa HOM05D001686 ORTHO05D001645 1.3e-11 74.7 185 32.4
Sabra01G0137900 Salix brachista HOM05D001686 ORTHO05D001645 1.3e-11 74.7 185 33.0
FAN23G1294 Fragaria x ananassa HOM05D001686 ORTHO05D001645 1.7e-11 74.3 198 32.8
CSS0047192 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 2.2e-11 73.9 202 30.2
ECA246G0731 Erigeron canadensis HOM05D001686 ORTHO05D001645 2.8e-11 73.6 193 30.1
AT4G32440 Arabidopsis thaliana HOM05D001686 ORTHO05D001645 3.7e-11 73.2 184 34.8
Lj4g0025282 Lotus japonicus HOM05D001686 ORTHO05D001645 3.7e-11 73.2 205 31.2
TAR365G0339 Trochodendron aralioides HOM05D001686 ORTHO05D001645 3.7e-11 73.2 219 31.1
arahy.Tifrunner.gnm1.ann1.0DBH4W Arachis hypogaea HOM05D001686 ORTHO05D001645 4.9e-11 72.8 187 33.2
FAN26G0998 Fragaria x ananassa HOM05D001686 ORTHO05D001645 4.9e-11 72.8 198 31.8
Nitab4.5_0002662g0060 Nicotiana tabacum HOM05D001686 ORTHO05D001645 4.9e-11 72.8 134 37.3
MBI04_g29854_MAGBIO Magnolia biondii HOM05D001686 ORTHO05D001645 6.3e-11 72.4 188 32.4
Medtr4g113670 Medicago truncatula HOM05D001686 ORTHO05D001645 6.3e-11 72.4 187 31.0
Nitab4.5_0001027g0110 Nicotiana tabacum HOM05D001686 ORTHO05D001645 6.3e-11 72.4 139 36.0
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 6.3e-11 72.4 155 37.4
arahy.Tifrunner.gnm1.ann1.Q9NLBV Arachis hypogaea HOM05D001686 ORTHO05D001645 8.3e-11 72.0 187 32.1
Psat4g040760 Pisum sativum HOM05D001686 ORTHO05D001645 1.4e-10 71.2 193 31.1
FvH4_1g03900 Fragaria vesca HOM05D001686 ORTHO05D001645 1.8e-10 70.9 198 32.3
FAN19G0171 Fragaria x ananassa HOM05D001686 ORTHO05D001645 1.8e-10 70.9 198 32.3
FAN28G0829 Fragaria x ananassa HOM05D001686 ORTHO05D001645 1.8e-10 70.9 198 32.3
MD15G1177400 Malus domestica HOM05D001686 ORTHO05D001645 1.8e-10 70.9 209 31.6
CSS0041540 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 2.4e-10 70.5 166 33.1
Ah.09g225590 Amaranthus hybridus HOM05D001686 ORTHO05D001645 3.1e-10 70.1 189 30.7
Hma1.2p1_0665F.1_g199280 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 3.1e-10 70.1 204 32.4
Lalb_Chr13g0302061 Lupinus albus HOM05D001686 ORTHO05D001645 4.1e-10 69.7 211 30.8
TAR362G0644 Trochodendron aralioides HOM05D001686 ORTHO05D001645 4.1e-10 69.7 244 29.5
CAN.G1550.10 Capsicum annuum HOM05D001686 ORTHO05D001645 7.0e-10 68.9 158 36.7
RcHm_v2.0_Chr2g0089371 Rosa chinensis HOM05D001686 ORTHO05D001645 7.0e-10 68.9 201 30.8
Gohir.A06G117000 Gossypium hirsutum HOM05D001686 ORTHO05D001645 1.6e-09 67.8 236 29.7
MD02G1037200 Malus domestica HOM05D001686 ORTHO05D001645 1.6e-09 67.8 188 34.0
Gorai.010G137600 Gossypium raimondii HOM05D001686 ORTHO05D001645 3.5e-09 66.6 236 29.2
Actinidia26411 Actinidia chinensis HOM05D001686 ORTHO05D001645 4.5e-09 66.2 179 29.6
CSS0037107 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 4.5e-09 66.2 166 33.1
AUR62033452 Chenopodium quinoa HOM05D001686 ORTHO05D001645 4.5e-09 66.2 179 30.2
MD08G1144800 Malus domestica HOM05D001686 ORTHO05D001645 4.5e-09 66.2 63 57.1
AL7G19400 Arabidopsis lyrata HOM05D001686 ORTHO05D001645 5.9e-09 65.9 190 32.6
Manes.06G052800 Manihot esculenta HOM05D001686 ORTHO05D001645 5.9e-09 65.9 150 34.0
Sopen05g033780 Solanum pennellii HOM05D001686 ORTHO05D001645 5.9e-09 65.9 157 35.0
vmacro20651 Vaccinium macrocarpon HOM05D001686 ORTHO05D001645 5.9e-09 65.9 135 34.1
Gohir.D06G119700 Gossypium hirsutum HOM05D001686 ORTHO05D001645 7.8e-09 65.5 236 29.2
Lsat_1_v5_gn_6_22121 Lactuca sativa HOM05D001686 ORTHO05D001645 1.3e-08 64.7 174 33.3
Hund27255 Selenicereus undatus HOM05D001686 ORTHO05D001645 1.3e-08 64.7 182 31.3
CSS0028350 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 1.7e-08 64.3 201 27.9
Carub.0007s0813 Capsella rubella HOM05D001686 ORTHO05D001645 1.7e-08 64.3 189 31.7
Aqoxy2G03487 Aquilegia oxysepala HOM05D001686 ORTHO05D001645 2.9e-08 63.5 181 33.1
MELO3C026635.2 Cucumis melo HOM05D001686 ORTHO05D001645 2.9e-08 63.5 166 28.9
COL.COLO4_12880 Corchorus olitorius HOM05D001686 ORTHO05D001645 3.8e-08 63.2 234 31.6
Actinidia07439 Actinidia chinensis HOM05D001686 ORTHO05D001645 5.0e-08 62.8 155 30.3
SHI18584 Sapria himalayana HOM05D001686 ORTHO05D001645 5.0e-08 62.8 198 29.3
arahy.Tifrunner.gnm1.ann1.S7WFE5 Arachis hypogaea HOM05D040051 ORTHO05D087555 8.6e-08 62.0 33 93.9
Lsat_1_v5_gn_5_31541 Lactuca sativa HOM05D001686 ORTHO05D001645 1.1e-07 61.6 262 29.8
Nn3g19461 Nelumbo nucifera HOM05D001686 ORTHO05D001645 1.1e-07 61.6 154 30.5
Lalb_Chr23g0268751 Lupinus albus HOM05D001686 ORTHO05D001645 1.9e-07 60.8 86 43.0
DCAR_022885 Daucus carota HOM05D001686 ORTHO05D001645 2.5e-07 60.5 243 30.0
ClCG06G010820 Citrullus lanatus HOM05D001686 ORTHO05D001645 3.3e-07 60.1 199 27.6
Eucgr.C01115 Eucalyptus grandis HOM05D001686 ORTHO05D001645 4.3e-07 59.7 229 26.6
arahy.Tifrunner.gnm1.ann1.IR9ZE8 Arachis hypogaea HOM05D000944 ORTHO05D019806 5.6e-07 59.3 33 90.9
Eucgr.C04172 Eucalyptus grandis HOM05D001686 ORTHO05D001645 7.3e-07 58.9 187 31.6
CDE01G0560 Ceratophyllum demersum HOM05D001686 ORTHO05D001645 1.2e-06 58.2 101 38.6
Lalb_Chr08g0243951 Lupinus albus HOM05D001686 ORTHO05D001645 1.2e-06 58.2 94 40.4
SGA_v2.0_scaffold4G02187 Striga asiatica HOM05D001686 ORTHO05D001645 1.2e-06 58.2 209 30.6
vmacro05195 Vaccinium macrocarpon HOM05D001686 ORTHO05D001645 1.2e-06 58.2 40 60.0
ClCG11G002830 Citrullus lanatus HOM05D001686 ORTHO05D001645 1.6e-06 57.8 98 38.8
MELO3C004526.2 Cucumis melo HOM05D001686 ORTHO05D001645 1.6e-06 57.8 107 37.4
Solyc11g007340.2 Solanum lycopersicum HOM05D001686 ORTHO05D001645 1.6e-06 57.8 173 30.1
unitig_26.g9783 Utricularia gibba HOM05D001686 ORTHO05D001645 1.6e-06 57.8 171 30.4
Solyc05g055340.4 Solanum lycopersicum HOM05D001686 ORTHO05D001645 2.1e-06 57.4 151 34.4
Manes.11G051335 Manihot esculenta HOM05D001686 ORTHO05D001645 3.6e-06 56.6 205 28.8
CANSAT56G0141 Cannabis sativa HOM05D001686 ORTHO05D001645 4.7e-06 56.2 275 26.9
Sp4g05000 Schrenkiella parvula HOM05D001686 ORTHO05D001645 6.1e-06 55.8 145 33.1


User provided reference genes

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