Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.1e-115 419.9 203 100.0
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 3.3e-115 418.3 202 99.5
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.0e-92 343.6 201 81.1
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 6.8e-92 340.9 201 80.6
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 9.8e-91 337.0 201 79.1
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 8.3e-90 334.0 201 79.6
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.8e-89 332.8 201 80.6
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 2.4e-89 332.4 201 78.1
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 4.1e-89 331.6 201 78.6
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.1e-86 323.6 201 78.1
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 5.2e-84 314.7 200 73.0
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 6.8e-84 314.3 201 75.1
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.7e-82 309.7 197 73.1
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 6.4e-82 307.8 200 72.0
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 7.0e-81 304.3 201 70.6
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.7e-80 302.4 201 70.1
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 4.6e-80 301.6 201 70.1
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 1.0e-79 300.4 202 70.8
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.0e-79 300.4 201 69.7
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.1e-78 297.0 202 69.3
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.1e-78 297.0 201 70.1
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 2.5e-78 295.8 198 69.7
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 2.1e-77 292.7 201 66.7
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.1e-76 290.4 197 69.0
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 5.8e-75 284.6 199 64.8
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 9.8e-75 283.9 197 66.0
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 2.9e-74 282.3 198 66.7
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 3.7e-74 282.0 201 65.7
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 3.7e-74 282.0 199 66.3
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 4.9e-74 281.6 199 67.8
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 6.4e-74 281.2 195 68.7
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 8.3e-74 280.8 202 66.3
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.1e-73 280.4 195 67.7
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 1.1e-73 280.4 201 64.7
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 1.4e-73 280.0 197 67.0
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 3.2e-73 278.9 201 65.2
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.4e-73 278.1 201 64.2
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.6e-72 276.6 199 66.3
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 2.1e-72 276.2 194 68.0
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.7e-72 275.8 197 66.0
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 2.7e-72 275.8 197 66.0
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 4.6e-72 275.0 201 65.2
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 6.0e-72 274.6 202 65.3
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 7.8e-72 274.2 197 64.5
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.0e-71 273.9 202 65.8
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.3e-71 273.5 197 65.5
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 2.3e-71 272.7 201 64.2
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 3.0e-71 272.3 194 64.9
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.0e-71 272.3 198 66.2
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 6.6e-71 271.2 194 63.9
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.1e-70 270.4 197 66.0
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 9.5e-70 267.3 199 64.3
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.2e-69 266.9 203 65.0
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.2e-69 266.9 201 64.2
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.1e-69 266.2 198 63.1
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 6.2e-69 264.6 198 61.1
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 6.2e-69 264.6 201 62.2
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 8.1e-69 264.2 198 63.1
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.3e-68 262.7 201 61.2
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 3.1e-68 262.3 197 63.5
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 3.1e-68 262.3 201 61.7
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 3.1e-68 262.3 199 62.3
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 4.0e-68 261.9 201 62.2
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 1.5e-67 260.0 201 61.2
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 2.0e-67 259.6 182 68.1
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 2.0e-67 259.6 198 62.6
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 3.4e-67 258.8 184 66.8
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 5.8e-67 258.1 197 62.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 5.8e-67 258.1 174 70.7
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 1.3e-66 256.9 171 70.2
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 2.9e-66 255.8 198 61.6
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.7e-66 255.4 201 61.2
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 4.9e-66 255.0 198 61.6
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 6.4e-66 254.6 202 60.4
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 8.4e-66 254.2 182 65.9
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.1e-65 253.8 197 61.9
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.4e-65 253.4 198 61.6
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 3.2e-65 252.3 185 63.8
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 3.2e-65 252.3 198 60.6
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 4.1e-65 251.9 198 60.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 7.1e-65 251.1 206 60.2
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.2e-65 250.8 198 61.1
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 9.2e-65 250.8 201 60.2
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.6e-64 250.0 174 68.4
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 3.5e-64 248.8 174 70.7
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 4.6e-64 248.4 226 57.1
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 4.6e-64 248.4 194 60.3
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.7e-63 246.5 197 60.9
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 3.9e-63 245.4 202 56.9
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 3.3e-62 242.3 137 83.2
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 2.8e-61 239.2 188 58.5
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 4.0e-60 235.3 196 58.7
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 2.0e-59 233.0 172 64.0
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.6e-59 232.6 200 56.0
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 6.4e-58 228.0 198 55.6
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 6.4e-58 228.0 189 57.1
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 2.4e-57 226.1 202 57.4
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.2e-57 225.7 169 64.5
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 3.2e-57 225.7 160 66.9
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.6e-56 223.4 175 59.4
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.1e-52 209.1 177 61.6
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.1e-49 200.7 210 48.6
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.1e-48 196.4 152 57.9
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 8.7e-47 191.0 195 48.7
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 5.6e-46 188.3 169 56.2
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.2e-43 180.6 207 47.3
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 7.1e-41 171.4 201 45.8
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.6e-40 170.2 200 45.5
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.3e-39 167.2 199 43.7
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.5e-38 163.7 194 44.8
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 9.0e-36 154.5 143 51.7
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 1.2e-35 154.1 114 61.4
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.0e-35 153.3 108 65.7
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 3.8e-34 149.1 161 50.3
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 6.5e-34 148.3 130 54.6
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.5e-33 146.4 175 44.6
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 1.9e-25 120.2 114 55.3
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 7.2e-25 118.2 160 41.2
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 2.8e-21 106.3 64 75.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.9e-17 93.6 84 57.1
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 5.5e-17 92.0 92 50.0
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.7e-16 89.7 88 53.4
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 5.7e-14 82.0 74 56.8
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.7e-13 80.5 63 57.1
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.4e-12 76.6 60 61.7
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.5e-11 73.9 53 62.3
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 7.7e-11 71.6 49 61.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 5.0e-10 68.9 126 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 6.5e-10 68.6 93 41.9
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.1e-06 57.8 229 26.2


User provided reference genes

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