Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.9e-87 325.9 169 100.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.8e-35 152.5 178 55.1
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 3.0e-24 115.9 186 47.3
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 7.5e-20 101.3 148 52.0
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.9e-19 99.4 167 42.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 5.4e-18 95.1 188 42.6
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 7.0e-18 94.7 172 43.6
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 7.0e-18 94.7 168 45.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 9.2e-18 94.4 196 41.3
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-17 94.0 174 42.0
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.1e-17 93.2 201 41.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 7.8e-17 91.3 189 42.3
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.8e-17 91.3 169 42.6
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.0e-16 90.9 161 42.9
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.3e-16 90.5 142 46.5
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.0e-16 89.4 160 44.4
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.9e-16 89.0 164 45.1
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 5.1e-16 88.6 181 42.5
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.1e-16 88.6 158 43.0
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 8.6e-16 87.8 163 41.1
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.9e-15 86.7 163 40.5
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.5e-15 86.3 190 41.6
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.5e-15 86.3 147 46.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.5e-15 86.3 161 41.6
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.3e-15 85.9 155 42.6
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.3e-15 85.5 190 41.6
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 7.3e-15 84.7 173 41.0
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 7.3e-15 84.7 198 40.4
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 9.5e-15 84.3 161 41.6
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.2e-14 84.0 174 42.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 2.1e-14 83.2 160 41.2
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.1e-14 83.2 160 42.5
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.7e-14 82.0 194 39.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.1e-13 80.9 181 39.2
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.1e-13 80.9 158 43.0
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.1e-13 80.9 173 42.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 2.3e-13 79.7 171 40.4
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.3e-13 79.7 166 41.6
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 5.2e-13 78.6 153 40.5
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.0e-12 76.6 196 40.8
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.6e-12 76.3 167 39.5
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 4.4e-12 75.5 168 36.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.4e-12 75.5 141 42.6
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.8e-12 75.1 166 41.0
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 7.5e-12 74.7 186 39.8
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 7.5e-12 74.7 164 42.1
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 9.9e-12 74.3 197 40.6
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 9.9e-12 74.3 145 41.4
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 9.9e-12 74.3 190 37.4
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.3e-11 73.9 155 40.6
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.3e-11 73.9 174 39.1
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.9e-11 72.8 185 37.3
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 3.7e-11 72.4 194 39.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.7e-11 72.4 166 40.4
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.9e-11 72.0 187 40.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.4e-11 71.6 186 39.2
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.1e-10 70.9 162 40.1
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.1e-10 70.9 181 38.1
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-10 70.1 134 42.5
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.9e-10 70.1 187 36.9
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.9e-10 70.1 167 37.7
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.4e-10 69.7 160 38.1
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.2e-10 69.3 188 36.7
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 5.4e-10 68.6 164 38.4
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.4e-10 68.6 141 39.7
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 7.1e-10 68.2 156 39.1
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 9.2e-10 67.8 165 37.6
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 9.2e-10 67.8 146 44.5
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.2e-09 67.4 161 37.3
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.6e-09 67.0 163 37.4
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-09 66.6 97 49.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.1e-09 66.6 168 41.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 7.8e-09 64.7 159 38.4
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.3e-08 63.9 119 44.5
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.7e-08 63.5 116 42.2
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.0e-08 62.8 158 36.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-08 62.8 193 37.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 3.9e-08 62.4 115 43.5
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.9e-08 62.4 192 37.0
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.1e-08 62.0 169 35.5
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 6.6e-08 61.6 184 40.8
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 8.6e-08 61.2 91 47.3
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 8.6e-08 61.2 160 35.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.1e-07 60.8 158 38.6
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.5e-07 60.5 163 35.0
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.9e-07 60.1 166 35.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.9e-07 60.1 140 38.6
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.5e-07 59.7 168 33.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.3e-07 59.3 149 35.6
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 4.3e-07 58.9 160 34.4
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.3e-07 58.2 138 39.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 9.5e-07 57.8 159 35.8
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.2e-06 57.4 163 35.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.6e-06 57.0 141 37.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.1e-06 56.6 186 34.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 2.1e-06 56.6 142 40.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.8e-06 56.2 183 36.6
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.8e-06 56.2 183 36.6
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.6e-06 55.8 195 35.4
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.7e-06 55.5 183 32.2
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 4.7e-06 55.5 137 35.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 8.1e-06 54.7 179 35.8


User provided reference genes

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