Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 0.0e+00 2355.1 1168 100.0
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1375.5 1003 67.4
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 0.0e+00 1263.4 1060 59.8
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1224.5 1033 59.1
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1194.5 1034 58.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1190.3 1042 56.8
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1171.4 1018 56.9
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1162.5 1061 55.2
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1159.1 1043 55.5
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1153.3 1017 56.1
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1140.2 1044 54.6
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1125.5 1075 53.2
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1125.5 1112 52.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1124.8 956 58.5
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1113.6 1022 55.2
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1102.4 1044 53.9
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1096.3 1050 53.6
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 952 59.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1090.1 1030 53.9
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 8.2e-307 1057.4 1033 52.0
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 1.5e-305 1053.1 1088 49.8
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 2.0e-305 1052.7 1052 50.8
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 4.5e-305 1051.6 1005 53.6
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 2.9e-304 1048.9 1070 51.7
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 6.5e-304 1047.7 988 53.9
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 8.5e-304 1047.3 992 53.5
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.9e-303 1046.2 1019 52.6
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.9e-303 1046.2 1031 52.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 5.5e-303 1044.6 991 53.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 4.6e-302 1041.6 819 62.5
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 6.1e-302 1041.2 1025 51.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 3.9e-301 1038.5 1050 51.5
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 5.1e-301 1038.1 1004 52.2
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.5e-300 1035.8 1004 52.2
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.3e-299 1033.5 969 54.4
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.1e-298 1030.4 1010 52.4
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.1e-298 1030.4 1010 52.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 2.4e-298 1029.2 1013 51.0
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 5.3e-298 1028.1 1014 52.3
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 1.3e-296 1023.5 1053 51.1
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.7e-296 1023.1 1045 51.0
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 3.8e-296 1021.9 1040 51.3
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.2e-295 1017.7 985 51.7
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 9.4e-295 1017.3 1017 50.9
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 1.2e-294 1016.9 1041 51.1
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 7.9e-294 1014.2 1022 50.6
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 8.2e-291 1004.2 1044 50.3
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 4.5e-289 998.4 1022 50.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.8e-285 986.5 962 51.9
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.1e-284 983.8 993 50.1
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 7.4e-284 981.1 989 49.7
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 2.8e-283 979.2 985 50.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 4.1e-282 975.3 982 50.1
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.0e-280 970.7 1006 49.3
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 3.8e-280 968.8 987 48.4
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 3.8e-280 968.8 925 53.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 5.0e-280 968.4 975 50.8
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.7e-278 962.6 959 50.9
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.0e-277 960.7 1034 47.1
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 8.8e-277 957.6 1021 47.9
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.2e-276 957.2 995 50.1
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.7e-275 953.4 948 49.3
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 1.1e-274 950.7 1066 46.8
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 2.7e-273 946.0 992 48.3
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 4.5e-273 945.3 995 50.1
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 5.9e-273 944.9 1010 47.8
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 6.5e-272 941.4 1014 47.7
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 8.5e-272 941.0 1068 46.3
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 1.5e-271 940.3 938 50.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 3.2e-271 939.1 1070 46.0
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 7.2e-271 937.9 1066 46.2
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 4.8e-267 925.2 919 52.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 2.9e-264 916.0 994 48.9
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.5e-263 913.7 727 62.0
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.5e-257 892.1 920 49.6
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.2e-252 877.5 898 49.7
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 4.4e-252 875.5 994 47.3
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 5.7e-252 875.2 994 47.3
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.1e-250 870.9 1049 45.1
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 5.9e-249 865.1 1046 46.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.6e-246 857.1 813 53.6
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.0e-244 850.1 782 53.8
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 3.4e-244 849.4 771 55.1
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.7e-243 847.0 1043 43.3
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.9e-243 846.3 980 44.6
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 7.0e-242 841.6 973 46.2
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 6.6e-232 808.5 1067 43.2
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.1e-226 791.2 736 55.0
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 2.9e-219 766.5 754 54.2
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 5.1e-216 755.7 1020 41.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 4.9e-211 739.2 651 56.1
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.7e-201 706.8 550 62.5
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 8.7e-200 701.8 1012 38.8
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.1e-199 701.4 636 53.6
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.9e-176 623.2 651 49.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.0e-167 594.3 601 50.7
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 5.3e-157 559.7 602 48.2
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 3.4e-119 434.1 452 49.6
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.7e-105 387.1 364 53.8
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.9e-104 383.3 386 51.0
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.1e-84 318.5 398 44.0
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 7.6e-79 300.1 304 48.7
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.3e-75 288.5 218 61.0
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.8e-73 281.6 303 45.9
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.9e-71 273.9 981 24.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.8e-64 252.3 226 54.9
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.6e-58 231.9 219 53.0
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.1e-52 212.2 187 54.5
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.6e-50 205.3 179 57.0
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.3e-48 197.6 179 55.3
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.7e-47 193.7 179 54.2
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.2e-46 192.2 171 55.0
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 5.2e-43 181.0 207 48.3
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.8e-41 175.3 130 62.3
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 8.3e-41 173.7 214 45.3
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-38 165.2 473 27.7
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 6.8e-35 154.1 206 38.8
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 4.4e-34 151.4 137 52.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.8e-33 148.7 134 56.0
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.8e-32 146.0 154 45.5
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.0e-31 142.5 115 54.8
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.8e-28 132.1 527 22.8
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.8e-27 129.4 982 22.9
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.5e-26 126.3 532 23.7
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 6.3e-25 120.9 317 29.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.4e-24 119.8 125 48.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 5.2e-19 101.3 94 44.7
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 6.8e-19 100.9 83 50.6
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.5e-18 99.8 82 58.5
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.3e-17 96.7 300 26.0
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.3e-14 86.7 314 25.8
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 3.0e-14 85.5 67 56.7
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.3e-13 81.6 108 38.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 9.5e-13 80.5 76 50.0
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-12 80.1 275 25.8
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 2.1e-12 79.3 77 48.1
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.6e-12 78.6 563 23.6
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 3.1e-11 75.5 131 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.2e-11 74.7 175 28.0
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 2.0e-10 72.8 58 53.4
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 5.8e-10 71.2 58 51.7
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.7e-09 68.6 66 51.5
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 6.4e-09 67.8 86 38.4
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-08 67.0 209 28.2
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 1.1e-08 67.0 48 54.2
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 1.9e-08 66.2 84 46.4
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.4e-08 65.9 48 54.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 4.6e-07 61.6 83 37.3


User provided reference genes

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