Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 5.1e-168 594.3 307 100.0
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 5.4e-117 424.9 288 76.4
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 6.0e-116 421.4 305 73.1
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 6.4e-110 401.4 278 75.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 4.3e-106 388.7 302 68.9
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.1e-104 384.0 328 64.3
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.1e-104 384.0 276 72.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.4e-104 383.6 291 70.1
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.1e-104 382.5 332 65.4
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 4.0e-104 382.1 304 66.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.0e-104 382.1 293 69.6
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 6.8e-104 381.3 281 72.6
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 6.8e-104 381.3 287 69.3
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 6.8e-104 381.3 320 65.0
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.2e-103 380.6 251 77.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.5e-103 380.2 295 70.2
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.0e-103 379.8 283 71.4
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 5.8e-103 378.3 283 70.0
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 9.9e-103 377.5 305 66.9
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 9.9e-103 377.5 309 66.7
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.7e-102 376.7 283 69.6
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.2e-102 376.3 278 70.9
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 4.9e-102 375.2 289 69.2
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 8.4e-102 374.4 312 66.0
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.4e-101 373.6 278 70.9
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 5.4e-101 371.7 277 70.8
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 7.1e-101 371.3 282 68.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 7.1e-101 371.3 293 66.9
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 4.6e-100 368.6 328 61.6
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 7.8e-100 367.9 282 68.1
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.0e-99 367.5 280 68.6
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.3e-99 367.1 282 68.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.7e-99 366.7 282 68.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.7e-99 366.7 299 65.6
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.3e-99 366.3 282 69.5
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.9e-99 365.5 288 67.0
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 3.9e-99 365.5 280 67.9
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 5.1e-99 365.2 299 64.5
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 6.6e-99 364.8 312 64.1
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.1e-98 364.0 307 65.1
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.9e-98 363.2 289 67.5
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.5e-98 362.8 282 69.1
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 7.3e-98 361.3 306 65.7
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 9.6e-98 360.9 255 74.5
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.3e-97 360.5 282 65.6
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.6e-97 360.1 304 63.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.1e-97 359.8 258 70.5
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.6e-97 359.0 321 63.2
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 8.1e-97 357.8 281 67.6
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 2.4e-96 356.3 282 64.9
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 4.0e-96 355.5 270 68.5
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.0e-96 355.5 288 64.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 6.9e-96 354.8 311 61.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.2e-95 354.0 311 61.1
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 3.4e-95 352.4 292 66.4
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 5.8e-95 351.7 317 60.9
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 7.6e-95 351.3 297 63.6
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.6e-95 351.3 362 56.6
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 7.6e-95 351.3 291 63.9
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 9.9e-95 350.9 304 61.5
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.7e-94 350.1 304 61.2
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.2e-94 349.7 252 73.4
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 2.9e-94 349.4 304 60.9
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.4e-93 347.1 278 64.4
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.9e-93 346.7 257 72.8
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 4.2e-93 345.5 278 64.7
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.6e-92 343.6 314 61.1
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.1e-92 343.2 278 63.7
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 3.5e-92 342.4 283 63.6
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.0e-91 340.9 303 61.1
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.3e-91 340.5 334 58.4
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 8.7e-91 337.8 306 58.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.9e-90 336.7 292 63.7
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 4.3e-90 335.5 281 62.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 7.4e-90 334.7 279 66.3
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-89 334.0 280 62.5
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-89 334.0 284 64.4
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.6e-89 333.6 284 64.1
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.6e-89 332.4 281 62.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 4.8e-89 332.0 290 61.0
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 8.1e-89 331.3 280 62.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.8e-88 330.1 278 65.8
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.4e-88 329.7 284 63.4
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 9.9e-87 324.3 278 62.2
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 5.5e-85 318.5 213 74.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.3e-83 313.9 281 63.7
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 5.6e-82 308.5 273 62.3
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 5.6e-82 308.5 197 79.7
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 6.2e-81 305.1 198 75.8
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 9.0e-80 301.2 251 63.3
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 3.9e-67 259.2 280 51.1
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 5.7e-66 255.4 286 49.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.2e-65 253.4 301 53.2
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 8.2e-65 251.5 260 54.6
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 9.1e-64 248.1 208 64.4
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 7.7e-63 245.0 244 60.7
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.1e-60 236.9 296 48.6
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 1.1e-58 231.1 207 60.9
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-58 231.1 270 47.8
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.2e-57 226.9 277 46.9
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.4e-56 224.2 272 47.1
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.8e-51 207.2 272 45.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.7e-44 183.3 126 73.0
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 3.6e-44 183.0 197 52.8
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 4.7e-44 182.6 134 68.7
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 2.3e-43 180.3 114 78.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 4.1e-40 169.5 144 62.5
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.2e-37 158.7 156 56.4
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-36 156.0 186 49.5
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 2.2e-33 147.1 188 46.3
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.6e-31 141.0 186 45.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-30 137.5 212 42.0
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 6.5e-30 135.6 214 42.1
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.9e-29 134.0 225 41.3
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.9e-29 134.0 104 65.4
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 3.7e-25 119.8 79 78.5
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 6.3e-25 119.0 71 77.5
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 8.3e-25 118.6 213 39.4
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.1e-24 118.2 136 51.5
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 2.8e-20 103.6 226 31.9
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.0e-19 101.7 85 60.0
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 4.9e-17 92.8 293 29.0
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-16 91.3 147 40.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.8e-16 90.9 204 29.9
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.1e-13 81.6 61 68.9
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-12 77.8 128 36.7
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 8.0e-12 75.5 77 55.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.0e-11 75.1 61 63.9
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 5.2e-11 72.8 67 56.7
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 5.8e-10 69.3 57 66.7
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.3e-09 68.2 80 50.0
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 7.0e-08 62.4 63 55.6
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 3.0e-06 57.0 142 28.2


User provided reference genes

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