Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 2.7e-169 598.6 299 100.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.1e-126 456.1 299 75.3
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.1e-126 456.1 299 76.6
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-122 443.7 303 73.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 3.2e-122 442.2 299 72.2
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 7.8e-121 437.6 299 72.6
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.3e-119 431.8 299 73.9
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 4.0e-117 425.2 299 71.9
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 7.6e-116 421.0 299 70.9
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.4e-114 416.8 299 69.6
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.4e-114 416.8 279 73.8
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 5.4e-114 414.8 279 73.1
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 7.1e-114 414.5 298 70.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.3e-114 414.1 299 70.6
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.3e-114 414.1 299 70.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 9.3e-114 414.1 302 69.5
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 6.0e-113 411.4 301 71.1
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 6.0e-113 411.4 298 69.1
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.8e-112 409.8 299 68.2
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.1e-111 407.1 299 68.6
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.5e-111 406.8 299 68.2
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.5e-111 406.8 287 72.1
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.5e-111 406.8 301 68.8
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.5e-111 406.8 300 69.0
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 3.7e-110 402.1 259 75.7
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 3.7e-110 402.1 297 67.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 4.8e-110 401.7 299 68.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 8.1e-110 401.0 299 67.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.1e-109 400.6 299 66.9
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.4e-109 400.2 299 67.2
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.8e-109 399.8 299 67.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.4e-109 399.4 299 67.6
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.1e-109 399.1 279 72.4
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.0e-109 398.7 299 66.9
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.3e-109 398.3 301 68.4
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 5.3e-109 398.3 301 68.4
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 6.9e-109 397.9 299 66.2
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.6e-108 396.0 299 67.6
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.5e-108 395.2 300 67.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.9e-108 394.0 300 67.3
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 9.9e-108 394.0 300 67.3
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.3e-107 393.7 302 67.5
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.7e-107 393.3 299 66.2
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.2e-107 392.9 298 66.4
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.8e-107 392.1 301 65.4
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 3.8e-107 392.1 299 66.6
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 4.9e-107 391.7 299 65.9
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 6.4e-107 391.3 302 66.9
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 6.4e-107 391.3 299 66.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.1e-106 390.6 298 65.8
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.2e-106 389.0 298 66.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.5e-106 388.3 299 65.2
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 9.3e-106 387.5 299 62.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.2e-105 387.1 300 65.0
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.1e-105 386.3 286 70.3
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 2.7e-105 386.0 300 63.7
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.6e-105 385.2 299 65.6
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.6e-105 385.2 301 64.1
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 6.0e-105 384.8 312 65.4
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 7.9e-105 384.4 299 65.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 3.0e-104 382.5 248 75.4
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.9e-104 382.1 241 77.2
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.7e-104 381.3 300 64.7
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 8.7e-104 380.9 314 62.7
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 8.7e-104 380.9 302 64.9
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 8.7e-104 380.9 301 65.4
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 8.7e-104 380.9 248 73.0
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.5e-103 380.2 301 63.8
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 3.3e-103 379.0 323 61.3
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 4.3e-103 378.6 297 65.0
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.6e-102 376.7 298 65.4
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.1e-102 376.3 233 77.3
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 6.2e-102 374.8 299 63.2
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 8.2e-102 374.4 302 64.2
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.4e-101 373.6 301 64.1
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.4e-101 373.6 299 65.2
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.4e-101 372.9 301 64.5
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 3.1e-101 372.5 334 59.6
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 4.0e-101 372.1 258 69.4
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 9.0e-101 370.9 257 69.6
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 9.0e-101 370.9 305 62.3
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.6e-100 369.4 245 75.5
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 4.5e-100 368.6 252 73.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 7.6e-100 367.9 299 63.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.0e-99 367.5 258 68.2
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.0e-99 367.5 258 68.2
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.0e-99 367.5 258 68.2
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-99 367.1 258 67.8
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 3.8e-99 365.5 258 68.6
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.9e-99 365.2 258 67.4
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.4e-98 363.6 245 75.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.9e-98 363.2 370 54.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 2.5e-98 362.8 258 67.4
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.5e-98 361.7 286 65.7
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 9.3e-98 360.9 254 67.7
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 3.5e-97 359.0 339 59.0
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 6.0e-97 358.2 305 62.3
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.9e-96 355.5 301 61.8
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 5.1e-96 355.1 271 66.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.2e-94 349.7 301 59.8
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 4.8e-94 348.6 297 61.6
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.4e-93 346.3 246 68.3
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 6.9e-93 344.7 224 75.9
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 2.6e-92 342.8 221 76.0
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.4e-92 342.4 228 75.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.2e-91 339.7 288 63.9
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 6.5e-91 338.2 295 60.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.5e-90 336.3 299 59.5
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.6e-89 333.6 227 70.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 3.0e-88 329.3 251 66.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 5.7e-87 325.1 299 57.9
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.8e-86 322.0 258 65.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.4e-85 319.7 203 76.4
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 7.7e-84 314.7 263 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.1e-81 306.6 226 66.8
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 3.6e-81 305.8 212 71.2
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 7.9e-81 304.7 209 71.8
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.9e-80 302.4 228 66.2
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 9.7e-79 297.7 227 68.3
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 8.2e-78 294.7 225 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.1e-77 292.4 213 68.5
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 2.9e-75 286.2 219 65.3
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 5.0e-75 285.4 188 73.9
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 8.8e-72 274.6 142 95.1
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 5.5e-66 255.4 167 79.6
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.7e-65 253.1 290 51.0
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.6e-65 252.7 232 53.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.3e-63 246.1 230 56.1
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.5e-63 245.0 430 39.1
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 6.3e-62 241.9 216 54.6
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 5.0e-59 232.3 142 78.2
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.2e-58 229.2 221 52.0
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.2e-58 229.2 221 52.0
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.2e-54 216.9 133 77.4
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.0e-51 205.7 234 44.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.5e-50 203.4 278 40.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.3e-50 203.0 234 44.4
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 8.9e-48 194.9 146 65.1
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.6e-44 184.1 144 62.5
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.6e-42 175.6 112 75.0
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.2e-39 167.9 168 56.5
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.6e-35 151.8 97 77.3
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.8e-32 144.1 97 75.3
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 3.1e-32 143.3 109 62.4
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.9e-30 136.0 101 73.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 8.3e-30 135.2 144 52.1
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 6.0e-28 129.0 149 50.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 6.2e-25 119.0 92 68.5
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 9.9e-23 111.7 157 44.6
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.1e-18 98.2 67 71.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 6.2e-17 92.4 98 51.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 6.9e-08 62.4 175 31.4


User provided reference genes

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