Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.3e-105 386.3 191 100.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.3e-100 369.8 191 93.7
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 92.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 91.1
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 91.6
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 92.1
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 91.6
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 91.1
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.7e-98 362.1 188 92.6
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 90.5
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.5e-98 361.7 190 92.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 91.6
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 91.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 91.1
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 7.8e-98 360.5 190 90.5
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 91.1
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 91.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 91.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 90.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 90.6
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.6
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.6
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 89.5
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 3.0e-97 358.6 189 91.5
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 90.6
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 3.0e-97 358.6 189 89.9
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 89.5
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 89.0
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 90.4
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 90.6
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 89.0
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.1
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 89.0
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 89.5
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 8.6e-97 357.1 189 91.0
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 8.6e-97 357.1 191 89.0
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.1e-96 356.7 191 89.5
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.1e-96 356.7 191 89.0
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.1e-96 356.7 191 90.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.5e-96 356.3 191 89.0
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.5e-96 356.3 191 88.5
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.5e-96 356.3 190 88.9
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.5e-96 356.3 190 88.9
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 89.5
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 2.5e-96 355.5 188 89.4
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 88.0
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 88.5
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.3e-96 355.1 189 89.9
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.3e-96 355.1 189 89.9
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.3e-96 355.1 189 89.9
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 4.3e-96 354.8 189 90.5
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.6e-96 354.4 191 89.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.6e-96 354.4 195 89.7
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 7.3e-96 354.0 189 88.9
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 7.3e-96 354.0 189 88.9
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 9.5e-96 353.6 189 89.4
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.2e-95 353.2 191 87.4
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.2e-95 353.2 191 88.5
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.2e-95 353.2 191 88.5
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.6e-95 352.8 191 89.0
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.6e-95 352.8 189 89.4
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.1e-95 352.4 191 88.0
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 6.2e-95 350.9 189 87.8
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 6.2e-95 350.9 188 88.3
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 8.1e-95 350.5 193 88.6
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.3e-94 349.0 191 86.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 86.4
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 5.2e-94 347.8 189 86.8
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 6.8e-94 347.4 201 86.1
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.2e-93 346.7 191 85.3
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.5e-93 346.3 191 85.9
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.5e-93 346.3 191 86.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.6e-93 345.5 201 85.1
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.4e-93 345.1 188 88.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 4.4e-93 344.7 188 86.2
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 5.8e-93 344.4 188 86.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.3e-92 343.2 188 85.6
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.7e-92 342.8 188 85.6
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.2e-92 342.4 188 85.1
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 3.7e-92 341.7 210 80.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 6.4e-92 340.9 216 78.2
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-91 339.7 188 85.6
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.4e-91 339.7 191 82.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.9e-91 339.3 198 83.3
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 4.1e-91 338.2 183 88.0
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 4.1e-91 338.2 189 85.7
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 4.1e-91 338.2 188 85.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 7.8e-90 334.0 232 73.3
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 3.0e-89 332.0 191 81.2
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 3.0e-89 332.0 214 77.1
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.9e-89 331.6 191 80.1
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 2.5e-88 328.9 191 80.1
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.3e-88 328.2 173 90.8
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 7.3e-88 327.4 191 82.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.2e-87 326.6 189 79.9
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.6e-87 325.1 189 79.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.0e-85 319.3 191 77.0
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 3.4e-85 318.5 173 87.9
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-83 313.2 181 84.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-83 313.2 181 84.0
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.1e-83 311.6 188 76.6
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.7e-82 308.9 188 75.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.1e-79 299.3 160 89.4
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 4.7e-79 298.1 167 85.0
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 6.9e-78 294.3 160 86.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 7.6e-77 290.8 160 86.9
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 3.8e-76 288.5 171 83.6
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.0e-73 278.9 161 83.2
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 8.7e-73 277.3 209 68.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 8.4e-68 260.8 188 68.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.0e-62 240.7 188 63.8
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 6.4e-60 234.6 140 80.7
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 6.0e-58 228.0 183 60.7
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.1e-55 219.5 206 51.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 4.8e-55 218.4 113 90.3
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.2e-55 218.0 149 73.2
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.5e-51 206.1 112 86.6
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 5.5e-51 204.9 106 87.7
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.6e-50 203.4 129 78.3
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 3.0e-49 199.1 109 88.1
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.5e-48 196.8 109 87.2
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.3e-48 195.7 109 87.2
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 9.6e-48 194.1 158 62.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.8e-38 163.3 81 92.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.4e-38 162.9 81 92.6
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 5.3e-38 161.8 79 93.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 9.1e-38 161.0 81 91.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.5e-37 160.2 83 88.0
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.2e-35 152.1 157 49.0
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.0e-33 147.5 84 84.5
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.0e-32 143.3 74 87.8
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.3e-31 140.6 81 84.0
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 2.2e-31 139.8 71 88.7
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 8.2e-31 137.9 71 90.1
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.2e-26 124.0 68 83.8
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-26 124.0 68 83.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 3.6e-26 122.5 68 82.4
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 6.1e-26 121.7 87 73.6
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 8.0e-18 94.7 51 80.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 4.4e-16 89.0 47 80.9
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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