Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.4e-117 426.4 230 100.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.5e-50 203.8 297 48.1
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.3e-50 202.2 260 52.7
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.3e-46 190.7 293 46.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 7.3e-42 174.9 297 45.8
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.6e-34 148.7 299 38.8
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.1e-33 146.7 301 39.2
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.9e-32 141.4 299 38.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 8.9e-32 141.4 299 38.1
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.1e-28 130.2 263 39.5
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.0e-27 127.9 301 34.2
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.0e-27 126.3 261 39.5
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 9.6e-26 121.3 244 39.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.1e-25 120.2 301 34.6
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.8e-25 119.0 259 39.8
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.9e-22 109.0 286 35.3
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.9e-21 107.1 292 33.2
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.9e-21 107.1 108 58.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 7.1e-21 105.1 112 58.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-19 100.9 279 32.3
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.5e-18 97.4 245 38.8
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.5e-18 97.4 205 40.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.4e-16 90.9 251 33.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.2e-15 87.8 299 31.1
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.0e-15 87.0 123 48.0
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 4.5e-15 85.9 223 34.1
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.5e-15 85.9 261 30.3
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 9.9e-15 84.7 297 29.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.2e-13 79.7 262 29.8
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 7.1e-13 78.6 290 29.7
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 7.1e-13 78.6 118 46.6
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.1e-12 77.0 262 29.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 4.6e-12 75.9 293 29.4
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 4.6e-12 75.9 278 30.6
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 6.0e-12 75.5 123 42.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.0e-12 75.5 294 30.6
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.3e-11 74.3 126 42.1
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.8e-11 73.9 279 30.1
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.0e-11 73.2 87 48.3
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.0e-11 73.2 111 42.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 5.1e-11 72.4 269 30.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 6.7e-11 72.0 126 38.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 8.7e-11 71.6 68 61.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.1e-10 71.2 281 28.5
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.1e-10 71.2 283 29.3
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.9e-10 70.5 79 51.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.3e-10 69.7 242 29.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 3.3e-10 69.7 124 39.5
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 4.3e-10 69.3 278 30.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.3e-10 69.3 127 40.9
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 4.3e-10 69.3 100 47.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 5.6e-10 68.9 281 28.5
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 7.4e-10 68.6 111 45.9
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 7.4e-10 68.6 268 29.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 7.4e-10 68.6 282 29.4
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 9.6e-10 68.2 256 30.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.6e-09 67.4 263 30.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.6e-09 67.4 260 28.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.1e-09 67.0 126 38.9
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.7e-09 66.2 263 31.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.7e-09 66.2 124 37.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.8e-09 65.9 202 30.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.8e-09 65.9 72 51.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 6.2e-09 65.5 277 29.6
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 6.2e-09 65.5 224 30.8
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.2e-09 65.5 272 29.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 6.2e-09 65.5 231 30.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.2e-09 65.5 89 44.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.4e-08 64.3 257 29.2
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.4e-08 64.3 262 28.6
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.4e-08 64.3 95 45.3
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.4e-08 64.3 114 42.1
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.8e-08 63.9 109 41.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-08 63.5 260 27.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.4e-08 63.5 260 27.7
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.4e-08 63.5 254 31.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 3.1e-08 63.2 261 29.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.1e-08 63.2 85 47.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.1e-08 63.2 134 38.1
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.0e-08 62.8 240 29.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.3e-08 62.4 130 36.9
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.3e-08 62.4 111 42.3
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 6.9e-08 62.0 261 27.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.0e-08 61.6 229 29.3
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 9.0e-08 61.6 246 29.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 9.0e-08 61.6 117 39.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 9.0e-08 61.6 289 29.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.2e-07 61.2 243 29.2
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.2e-07 61.2 280 27.5
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.2e-07 61.2 72 52.8
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.5e-07 60.8 198 28.8
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-07 60.8 125 37.6
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.5e-07 60.8 252 29.4
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.5e-07 60.8 118 42.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.0e-07 60.5 282 31.6
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.6e-07 60.1 125 37.6
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.6e-07 60.1 255 29.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.6e-07 60.1 80 48.8
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 3.4e-07 59.7 209 33.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.4e-07 59.7 262 28.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 3.4e-07 59.7 70 47.1
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-07 59.7 121 38.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-07 59.7 121 38.8
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.4e-07 59.7 192 29.7
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.5e-07 59.3 125 30.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.5e-07 59.3 274 28.1
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 7.6e-07 58.5 71 45.1
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 7.6e-07 58.5 70 45.7
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 7.6e-07 58.5 118 35.6
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.0e-06 58.2 71 45.1
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.0e-06 58.2 254 29.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.3e-06 57.8 70 47.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.3e-06 57.8 121 38.0
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.3e-06 57.8 51 60.8
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.7e-06 57.4 181 29.3
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.2e-06 57.0 92 41.3
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.2e-06 57.0 72 47.2
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 2.2e-06 57.0 107 40.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.8e-06 56.2 70 47.1
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.8e-06 56.2 70 47.1
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.8e-06 56.2 70 47.1
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.8e-06 56.2 70 47.1
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.8e-06 56.2 70 47.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 3.8e-06 56.2 70 47.1
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 4.9e-06 55.8 154 33.8
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.9e-06 55.8 110 40.0
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 4.9e-06 55.8 89 39.3
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.4e-06 55.5 254 27.6
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 8.4e-06 55.1 252 27.8


User provided reference genes

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