Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 4.1e-72 274.6 141 100.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 9.6e-53 210.3 136 78.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.9e-40 169.5 142 62.7
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.6e-39 164.9 138 60.1
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.0e-38 163.7 135 63.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.5e-37 159.1 137 56.9
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 4.8e-36 154.8 141 54.6
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 9.0e-35 150.6 125 62.4
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.0e-34 149.4 125 60.8
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.6e-34 147.5 142 52.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 7.6e-34 147.5 153 54.9
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.3e-33 146.7 139 56.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.7e-33 146.4 125 56.0
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.7e-33 146.4 137 57.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.8e-33 145.2 152 52.0
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.1e-32 143.7 120 59.2
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.5e-32 142.5 142 54.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.2e-32 142.1 121 58.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.2e-32 142.1 141 52.5
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 4.2e-32 141.7 146 52.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.5e-32 141.4 133 55.6
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.2e-32 141.0 124 54.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 7.2e-32 141.0 139 55.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 9.3e-32 140.6 140 49.3
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-31 140.2 128 57.8
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.6e-31 139.8 139 51.8
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.1e-31 139.4 118 58.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 4.6e-31 138.3 140 51.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 6.1e-31 137.9 140 52.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.1e-31 137.9 136 50.7
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 7.9e-31 137.5 140 52.9
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 7.9e-31 137.5 136 50.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 7.9e-31 137.5 134 53.7
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 7.9e-31 137.5 138 52.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.0e-30 137.1 148 48.0
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.3e-30 136.7 140 50.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.3e-30 136.7 139 50.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.3e-30 136.7 139 49.6
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-30 136.7 122 56.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-30 136.7 122 56.6
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.8e-30 136.3 123 56.9
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.8e-30 136.3 118 54.2
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.8e-30 136.3 118 55.9
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.8e-30 136.3 129 51.2
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 3.0e-30 135.6 133 53.4
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 5.1e-30 134.8 137 51.8
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 6.7e-30 134.4 140 52.9
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 6.7e-30 134.4 133 51.1
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.1e-29 133.7 123 56.1
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.3e-29 132.1 138 50.0
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 4.3e-29 131.7 125 52.8
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 4.3e-29 131.7 132 49.2
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 5.7e-29 131.3 139 53.2
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.7e-29 131.3 132 50.8
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.4e-29 131.0 138 50.7
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 9.7e-29 130.6 141 51.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.3e-28 130.2 147 51.0
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.3e-28 130.2 141 50.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 2.2e-28 129.4 141 49.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.7e-28 128.6 123 52.8
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.1e-27 127.1 140 50.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.4e-27 126.7 143 52.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.8e-27 126.3 140 48.6
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.1e-27 125.6 141 48.2
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 3.1e-27 125.6 138 50.7
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 5.3e-27 124.8 131 49.6
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 6.9e-27 124.4 138 51.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 6.9e-27 124.4 140 47.1
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 9.1e-27 124.0 130 49.2
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.5e-26 123.2 151 46.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.0e-26 122.9 150 48.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.6e-26 122.5 140 50.0
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 2.6e-26 122.5 161 44.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.4e-26 122.1 138 50.0
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 3.4e-26 122.1 140 48.6
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.5e-26 121.7 127 52.0
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.5e-26 121.7 94 64.9
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 5.9e-26 121.3 140 50.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.7e-26 120.9 133 50.4
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.0e-25 120.6 134 50.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.3e-25 120.2 141 48.9
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.2e-25 119.4 140 50.7
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.2e-25 119.4 144 50.0
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.8e-25 118.6 137 49.6
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 5.0e-25 118.2 137 51.1
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 5.0e-25 118.2 137 51.1
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 6.5e-25 117.9 137 46.7
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.5e-25 117.5 130 54.6
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-24 117.1 138 51.4
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.1e-24 117.1 138 51.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.1e-24 117.1 126 50.0
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.1e-24 117.1 164 43.3
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.4e-24 116.7 133 46.6
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 4.2e-24 115.2 137 48.9
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.6e-23 113.2 140 48.6
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.6e-23 113.2 131 48.1
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 2.1e-23 112.8 125 44.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-23 112.1 140 47.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.6e-23 112.1 89 60.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 4.6e-23 111.7 141 46.8
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 6.1e-23 111.3 140 46.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-22 110.5 137 47.4
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-22 109.4 137 46.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-22 109.4 137 46.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-22 109.0 135 46.7
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.0e-22 109.0 135 46.7
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.0e-22 109.0 135 46.7
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.9e-22 108.6 136 46.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.1e-22 108.2 141 48.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-21 107.1 94 55.3
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-21 107.1 137 45.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-21 107.1 141 47.5
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-21 106.7 94 55.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.5e-21 106.7 140 42.9
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.4e-21 105.1 89 57.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 9.7e-21 104.0 92 53.3
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.3e-20 103.6 140 43.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.7e-20 103.2 140 43.6
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 2.2e-20 102.8 122 43.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.8e-20 101.7 119 47.9
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 9.1e-19 97.4 94 51.1
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-18 97.1 136 43.4
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.2e-18 97.1 139 42.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.0e-18 96.3 147 38.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.4e-18 95.5 123 43.9
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 3.4e-18 95.5 135 40.7
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 4.5e-18 95.1 147 38.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 4.5e-18 95.1 140 40.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.3e-17 93.6 137 40.1
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.3e-17 93.6 106 43.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 2.9e-17 92.4 140 42.1
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 5.0e-17 91.7 108 44.4
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 5.0e-17 91.7 104 49.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 6.5e-17 91.3 152 40.8
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.2e-16 89.0 116 44.0
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.2e-15 87.0 83 51.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.2e-15 87.0 75 56.0
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.3e-14 82.8 92 47.8
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.0e-14 82.4 69 58.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.0e-14 82.4 152 35.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.7e-14 81.3 134 40.3
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.7e-14 81.3 105 47.6
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 9.7e-13 77.4 94 43.6
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.4e-11 73.6 98 42.9
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 4.1e-11 72.0 89 43.8
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.1e-11 72.0 139 36.7
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.3e-11 71.6 132 35.6
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.0e-09 67.4 84 42.9
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.0e-09 67.4 43 76.7
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 8.5e-09 64.3 139 31.7
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 8.5e-09 64.3 48 64.6
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.2e-08 62.0 77 37.7
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 4.2e-08 62.0 48 60.4
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.7e-07 59.3 90 41.1
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 3.0e-06 55.8 71 45.1


User provided reference genes

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