Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold33G13371 Striga asiatica HOM05D004747 ORTHO05D006051 9.3e-65 250.0 120 100.0
SGA_v2.0_scaffold276G46638 Striga asiatica HOM05D004747 ORTHO05D006051 3.0e-23 112.1 59 91.5
HanXRQChr14g0441201 Helianthus annuus HOM05D004747 ORTHO05D006051 7.5e-22 107.5 68 76.5
Migut.H01001 Erythranthe guttata HOM05D004747 ORTHO05D006051 1.3e-21 106.7 59 84.7
CSS0024014 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 6.3e-21 104.4 59 83.1
Lsat_1_v5_gn_2_76601 Lactuca sativa HOM05D004747 ORTHO05D006051 6.3e-21 104.4 62 79.0
PSO731G0026 Papaver somniferum HOM05D004747 ORTHO05D006051 6.3e-21 104.4 67 76.1
CSS0048961 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 8.3e-21 104.0 59 83.1
Dinv26824 Davidia involucrata HOM05D004747 ORTHO05D006051 8.3e-21 104.0 62 79.0
ECA238G3955 Erigeron canadensis HOM05D004747 ORTHO05D006051 8.3e-21 104.0 79 67.1
GSVIVG01018981001 Vitis vinifera HOM05D004747 ORTHO05D006051 8.3e-21 104.0 66 74.2
Cpa.g.sc337.6 Carica papaya HOM05D004747 ORTHO05D006051 1.1e-20 103.6 71 74.6
Cc07_g09390 Coffea canephora HOM05D004747 ORTHO05D006051 1.1e-20 103.6 59 83.1
PSO764G0172 Papaver somniferum HOM05D004747 ORTHO05D006051 1.1e-20 103.6 59 83.1
SMO196G0071 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 1.1e-20 103.6 69 72.5
DCAR_025922 Daucus carota HOM05D004747 ORTHO05D006051 1.4e-20 103.2 59 81.4
HanXRQChr07g0192831 Helianthus annuus HOM05D004747 ORTHO05D006051 1.4e-20 103.2 62 79.0
Rhsim08G0114500 Rhododendron simsii HOM05D004747 ORTHO05D006051 1.4e-20 103.2 59 81.4
HPP92_014469 Vanilla planifolia HOM05D004747 ORTHO05D006051 1.4e-20 103.2 64 73.4
Atru.chr3.560 Acer truncatum HOM05D004747 ORTHO05D006051 1.8e-20 102.8 66 74.2
Cfa004298 Carpinus fangiana HOM05D000682 ORTHO05D000510 1.8e-20 102.8 66 74.2
Haze_15104 Corylus avellana HOM05D004747 ORTHO05D006051 1.8e-20 102.8 66 74.2
FvH4_1g13450 Fragaria vesca HOM05D004747 ORTHO05D006051 1.8e-20 102.8 59 83.1
FAN19G0426 Fragaria x ananassa HOM05D004747 ORTHO05D006051 1.8e-20 102.8 59 83.1
Lalb_Chr05g0212861 Lupinus albus HOM05D004747 ORTHO05D006051 1.8e-20 102.8 67 73.1
vmacro17845 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 1.8e-20 102.8 59 81.4
FAN23G1256 Fragaria x ananassa HOM05D004747 ORTHO05D006051 2.4e-20 102.4 59 83.1
FAN26G3322 Fragaria x ananassa HOM05D004747 ORTHO05D006051 2.4e-20 102.4 59 83.1
FAN28G1132 Fragaria x ananassa HOM05D004747 ORTHO05D006051 2.4e-20 102.4 59 83.1
Glyma.01G175100 Glycine max HOM05D004747 ORTHO05D006051 2.4e-20 102.4 67 73.1
Glyma.11G067300 Glycine max HOM05D004747 ORTHO05D006051 2.4e-20 102.4 67 73.1
Mapoly0005s0256 Marchantia polymorpha HOM05D004747 ORTHO05D006051 2.4e-20 102.4 64 76.6
Phvul.002G029300 Phaseolus vulgaris HOM05D004747 ORTHO05D006051 2.4e-20 102.4 67 73.1
Pp3c7_6390 Physcomitrium patens HOM05D004747 ORTHO05D006051 2.4e-20 102.4 68 70.6
TAR628G1004 Trochodendron aralioides HOM05D004747 ORTHO05D006051 2.4e-20 102.4 59 81.4
VMungo1215G2053 Vigna mungo HOM05D004747 ORTHO05D006051 2.4e-20 102.4 67 73.1
Pp3c11_26490 Physcomitrium patens HOM05D004747 ORTHO05D006051 3.1e-20 102.1 68 70.6
Sabra07G0023600 Salix brachista HOM05D004747 ORTHO05D006051 3.1e-20 102.1 59 81.4
Actinidia19177 Actinidia chinensis HOM05D004747 ORTHO05D006051 4.1e-20 101.7 59 81.4
Aqoxy5G01657 Aquilegia oxysepala HOM05D004747 ORTHO05D006051 4.1e-20 101.7 59 81.4
Lj4g0010267 Lotus japonicus HOM05D004747 ORTHO05D006051 4.1e-20 101.7 62 77.4
Manes.02G092600 Manihot esculenta HOM05D004747 ORTHO05D006051 4.1e-20 101.7 59 81.4
TWI09G1640 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 4.1e-20 101.7 59 81.4
TAR376G1008 Trochodendron aralioides HOM05D004747 ORTHO05D006051 4.1e-20 101.7 59 81.4
Ciclev10025502m.g Citrus clementina HOM05D004747 ORTHO05D006051 5.3e-20 101.3 66 72.7
Dinv39972 Davidia involucrata HOM05D004747 ORTHO05D006051 5.3e-20 101.3 62 77.4
Nn1g05031 Nelumbo nucifera HOM05D004747 ORTHO05D006051 5.3e-20 101.3 64 73.4
Nitab4.5_0000434g0070 Nicotiana tabacum HOM05D004747 ORTHO05D006051 5.3e-20 101.3 62 79.0
Nitab4.5_0004711g0020 Nicotiana tabacum HOM05D004747 ORTHO05D006051 5.3e-20 101.3 62 79.0
Peaxi162Scf00515g00430 Petunia axillaris HOM05D004747 ORTHO05D006051 5.3e-20 101.3 62 77.4
RcHm_v2.0_Chr2g0101831 Rosa chinensis HOM05D004747 ORTHO05D006051 5.3e-20 101.3 59 81.4
TWI53G0963 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 5.3e-20 101.3 59 81.4
ATR0733G064 Amborella trichopoda HOM05D004747 ORTHO05D006051 7.0e-20 100.9 59 79.7
Oeu007440.1 Olea europaea HOM05D004747 ORTHO05D006051 7.0e-20 100.9 56 83.9
Oeu054757.1 Olea europaea HOM05D004747 ORTHO05D006051 7.0e-20 100.9 56 83.9
Sabra05G0102100 Salix brachista HOM05D004747 ORTHO05D006051 7.0e-20 100.9 59 79.7
Potri.005G124300 Populus trichocarpa HOM05D004747 ORTHO05D006051 9.1e-20 100.5 59 79.7
Potri.007G026900 Populus trichocarpa HOM05D004747 ORTHO05D006051 9.1e-20 100.5 59 79.7
vmacro12724 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 9.1e-20 100.5 62 75.8
CiPaw.01G036600 Carya illinoinensis HOM05D004747 ORTHO05D006051 1.2e-19 100.1 59 79.7
CiPaw.02G016400 Carya illinoinensis HOM05D004747 ORTHO05D006051 1.2e-19 100.1 59 79.7
Ca_22260_v3 Cicer arietinum L. HOM05D004747 ORTHO05D006051 1.2e-19 100.1 62 75.8
Lalb_Chr05g0227631 Lupinus albus HOM05D004747 ORTHO05D006051 1.2e-19 100.1 62 75.8
Lalb_Chr09g0333571 Lupinus albus HOM05D004747 ORTHO05D006051 1.2e-19 100.1 62 75.8
Psat4g092040 Pisum sativum HOM05D004747 ORTHO05D006051 1.2e-19 100.1 62 75.8
TPR.G34973 Trifolium pratense HOM05D004747 ORTHO05D006051 1.2e-19 100.1 62 75.8
CANSAT01G3054 Cannabis sativa HOM05D004747 ORTHO05D006051 1.6e-19 99.8 59 79.7
MD15G1264300 Malus domestica HOM05D004747 ORTHO05D006051 1.6e-19 99.8 59 79.7
Manes.01G134400 Manihot esculenta HOM05D004747 ORTHO05D006051 1.6e-19 99.8 59 78.0
Prupe.7G153200 Prunus persica HOM05D004747 ORTHO05D006051 1.6e-19 99.8 59 79.7
arahy.Tifrunner.gnm1.ann1.0AQ0IW Arachis hypogaea HOM05D004747 ORTHO05D006051 2.0e-19 99.4 59 79.7
CAN.G358.106 Capsicum annuum HOM05D004747 ORTHO05D006051 2.0e-19 99.4 62 79.0
Ah.02g126430 Amaranthus hybridus HOM05D004747 ORTHO05D006051 2.7e-19 99.0 59 79.7
AUR62003163 Chenopodium quinoa HOM05D004747 ORTHO05D006051 2.7e-19 99.0 59 79.7
AUR62007983 Chenopodium quinoa HOM05D004747 ORTHO05D006051 2.7e-19 99.0 59 79.7
MBI16_g37699_MAGBIO Magnolia biondii HOM05D004747 ORTHO05D006051 2.7e-19 99.0 64 71.9
Medtr8g077840 Medicago truncatula HOM05D004747 ORTHO05D006051 2.7e-19 99.0 62 74.2
QL06p045745 Quercus lobata HOM05D004747 ORTHO05D006051 2.7e-19 99.0 57 80.7
Sed0005805 Sechium edule HOM05D004747 ORTHO05D006051 2.7e-19 99.0 62 75.8
Sed0017755 Sechium edule HOM05D004747 ORTHO05D006051 2.7e-19 99.0 62 75.8
TWI73G1158 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 2.7e-19 99.0 59 79.7
CBR_g28042 Chara braunii HOM05D004747 ORTHO05D006051 3.5e-19 98.6 69 68.1
DCAR_017262 Daucus carota HOM05D004747 ORTHO05D006051 3.5e-19 98.6 60 76.7
Lj4A199T81 Lonicera japonica HOM05D004747 ORTHO05D006051 3.5e-19 98.6 58 77.6
MD02G1149700 Malus domestica HOM05D004747 ORTHO05D006051 3.5e-19 98.6 59 78.0
PSO541G4083 Papaver somniferum HOM05D004747 ORTHO05D006051 5.9e-19 97.8 59 78.0
PSO675G8944 Papaver somniferum HOM05D004747 ORTHO05D006051 5.9e-19 97.8 59 78.0
PGSC0003DMG400014893 Solanum tuberosum HOM05D004747 ORTHO05D006051 5.9e-19 97.8 62 77.4
EL10Ac6g14938 Beta vulgaris HOM05D004747 ORTHO05D006051 7.7e-19 97.4 59 78.0
MELO3C007821.2 Cucumis melo HOM05D004747 ORTHO05D006051 1.0e-18 97.1 62 74.2
CsaV3_6G046180 Cucumis sativus L. HOM05D004747 ORTHO05D006051 1.0e-18 97.1 62 74.2
COL.COLO4_22095 Corchorus olitorius HOM05D004747 ORTHO05D006051 1.3e-18 96.7 60 75.0
Eucgr.H01267 Eucalyptus grandis HOM05D004747 ORTHO05D006051 1.3e-18 96.7 61 78.7
Thecc.01G037400 Theobroma cacao HOM05D004747 ORTHO05D006051 1.7e-18 96.3 56 78.6
ClCG01G019460 Citrullus lanatus HOM05D004747 ORTHO05D006051 2.2e-18 95.9 62 72.6
Gohir.A10G095200 Gossypium hirsutum HOM05D004747 ORTHO05D006051 2.2e-18 95.9 56 78.6
Gohir.D10G092700 Gossypium hirsutum HOM05D004747 ORTHO05D006051 2.2e-18 95.9 56 78.6
Gorai.011G101900 Gossypium raimondii HOM05D004747 ORTHO05D006051 2.2e-18 95.9 56 78.6
Sc16g0000910 Simmondsia chinensis HOM05D004747 ORTHO05D006051 2.2e-18 95.9 59 76.3
Solyc02g085420.4 Solanum lycopersicum HOM05D004747 ORTHO05D006051 2.9e-18 95.5 62 75.8
Sopen02g030100 Solanum pennellii HOM05D004747 ORTHO05D006051 2.9e-18 95.5 62 75.8
unitig_21.g20956 Utricularia gibba HOM05D004747 ORTHO05D006051 5.0e-18 94.7 58 77.6
Sc07g0000250 Simmondsia chinensis HOM05D004747 ORTHO05D006051 6.5e-18 94.4 55 78.2
arahy.Tifrunner.gnm1.ann1.Q9RGLK Arachis hypogaea HOM05D004747 ORTHO05D006051 1.1e-17 93.6 59 78.0
Aa31LG1G15300 Aethionema arabicum HOM05D004747 ORTHO05D006051 1.9e-17 92.8 63 73.0
Duzib264G0087 Durio zibethinus HOM05D004747 ORTHO05D006051 1.9e-17 92.8 56 76.8
CDE03G0295 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 2.5e-17 92.4 64 70.3
CDE04G0203 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 2.5e-17 92.4 64 70.3
Thhalv10010375m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 3.2e-17 92.0 67 73.1
Hund14148 Selenicereus undatus HOM05D004747 ORTHO05D006051 4.2e-17 91.7 53 79.2
PGR102G2748 Punica granatum HOM05D004747 ORTHO05D006051 5.5e-17 91.3 51 84.3
Zm00001eb224440 Zea mays HOM05D004747 ORTHO05D006051 7.2e-17 90.9 62 67.7
AL5G30830 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 1.2e-16 90.1 65 72.3
AT3G50670 Arabidopsis thaliana HOM05D004747 ORTHO05D006051 1.2e-16 90.1 65 72.3
Sp5g11550 Schrenkiella parvula HOM05D004747 ORTHO05D006051 1.2e-16 90.1 67 68.7
Carub.0005s1700 Capsella rubella HOM05D004747 ORTHO05D006051 1.6e-16 89.7 65 70.8
BcaC04g23156 Brassica carinata HOM05D004747 ORTHO05D006051 2.1e-16 89.4 68 67.6
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 2.1e-16 89.4 68 67.6
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 2.1e-16 89.4 68 67.6
BolC9t54053H Brassica oleracea HOM05D004747 ORTHO05D006051 2.1e-16 89.4 68 67.6
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 2.1e-16 89.4 68 67.6
Duzib187G1223 Durio zibethinus HOM05D004747 ORTHO05D006051 2.7e-16 89.0 58 74.1
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 4.7e-16 88.2 68 66.2
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 6.1e-16 87.8 71 63.4
Thhalv10004249m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 6.1e-16 87.8 69 68.1
Sp2g29940 Schrenkiella parvula HOM05D004747 ORTHO05D006051 1.4e-15 86.7 52 76.9
C07p25050 Brassica napus HOM05D004747 ORTHO05D006051 2.6e-14 82.4 66 68.2
Psat0s889g0040 Pisum sativum HOM05D004747 ORTHO05D006051 2.6e-14 82.4 63 63.5
Psat3g054320 Pisum sativum HOM05D004747 ORTHO05D006051 3.4e-14 82.0 62 62.9
BolC7t43037H Brassica oleracea HOM05D002587 ORTHO05D002778 1.4e-12 76.6 68 61.8
Cre16.g656250 Chlamydomonas reinhardtii HOM05D004747 ORTHO05D006051 2.7e-11 72.4 41 80.5
MCO05G091 Micromonas commoda HOM05D004747 ORTHO05D006051 2.9e-10 68.9 57 54.4
PRCOL_00001882 Prasinoderma coloniale HOM05D004747 ORTHO05D006051 4.2e-09 65.1 44 65.9
BcaC06g34739 Brassica carinata HOM05D004747 ORTHO05D006051 3.6e-08 62.0 39 71.8
Cfa025930 Carpinus fangiana HOM05D004747 ORTHO05D006051 4.7e-08 61.6 41 63.4
Rhsim07G0145800 Rhododendron simsii HOM05D004747 ORTHO05D001064 1.8e-07 59.7 33 75.8


User provided reference genes

Program Settings