Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 8.1e-118 427.2 228 100.0
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 8.4e-107 390.6 232 87.9
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 2.3e-104 382.5 230 85.7
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 4.0e-101 371.7 233 82.8
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 2.6e-100 369.0 232 82.8
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 9.9e-100 367.1 232 81.0
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 4.9e-99 364.8 229 81.7
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 6.4e-99 364.4 229 80.3
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 5.4e-98 361.3 232 80.6
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.2e-97 360.1 230 80.4
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 2.7e-97 359.0 233 79.8
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.5e-97 358.6 230 80.9
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 6.0e-97 357.8 229 85.2
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 6.0e-97 357.8 229 78.6
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.0e-96 357.1 229 79.5
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 1.1e-95 353.6 231 78.8
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 2.5e-95 352.4 232 77.6
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.4e-93 345.9 232 77.6
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 4.5e-92 341.7 227 76.7
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 5.8e-92 341.3 231 75.8
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 7.6e-92 340.9 229 76.0
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 2.9e-91 339.0 232 75.9
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 6.4e-91 337.8 232 75.4
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 3.2e-90 335.5 228 78.1
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 4.2e-90 335.1 233 76.0
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 5.5e-90 334.7 233 75.1
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.6e-89 333.2 229 75.5
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.6e-89 333.2 229 75.5
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 2.1e-89 332.8 232 75.4
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 2.1e-89 332.8 228 74.6
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 2.7e-89 332.4 232 75.4
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 3.5e-89 332.0 228 74.6
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 3.5e-89 332.0 230 75.7
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 3.5e-89 332.0 230 76.1
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 4.6e-89 331.6 228 75.9
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 4.6e-89 331.6 229 75.5
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 4.6e-89 331.6 228 75.0
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 4.6e-89 331.6 229 75.5
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 6.0e-89 331.3 228 75.0
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 6.0e-89 331.3 228 75.9
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 7.9e-89 330.9 229 75.1
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.0e-88 330.5 229 73.8
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.3e-88 330.1 230 75.2
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.3e-88 330.1 230 75.2
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.3e-88 330.1 229 75.1
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 1.3e-88 330.1 223 79.8
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 1.8e-88 329.7 230 74.3
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.8e-88 329.7 228 72.4
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 3.0e-88 328.9 229 76.0
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 3.0e-88 328.9 229 75.1
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 3.0e-88 328.9 229 74.7
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 3.9e-88 328.6 235 75.7
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 3.9e-88 328.6 229 74.2
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 5.1e-88 328.2 234 73.1
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 5.1e-88 328.2 229 73.8
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 8.7e-88 327.4 229 75.5
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 1.1e-87 327.0 232 73.7
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.1e-87 327.0 229 75.1
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 1.1e-87 327.0 236 78.0
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 1.5e-87 326.6 234 73.1
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.9e-87 326.2 227 74.9
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.5e-87 325.9 229 75.1
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 2.5e-87 325.9 229 75.5
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 3.3e-87 325.5 233 73.4
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.3e-87 325.1 231 74.9
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 4.3e-87 325.1 228 78.9
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 4.3e-87 325.1 235 74.9
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.7e-87 324.7 224 76.3
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.7e-87 324.7 224 75.9
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 9.6e-87 323.9 234 73.1
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 2.8e-86 322.4 232 74.1
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 3.7e-86 322.0 232 73.7
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 3.7e-86 322.0 228 73.2
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 6.2e-86 321.2 233 74.7
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 6.2e-86 321.2 227 78.0
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 8.2e-86 320.9 232 73.3
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 8.2e-86 320.9 232 71.1
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.4e-85 320.1 238 71.8
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 1.8e-85 319.7 233 78.1
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.1e-85 318.9 224 75.9
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 4.0e-85 318.5 238 71.4
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 5.3e-85 318.2 179 87.7
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 1.2e-84 317.0 229 78.2
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 3.4e-84 315.5 234 70.9
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 3.4e-84 315.5 235 71.9
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 2.2e-83 312.8 228 71.5
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 2.2e-83 312.8 228 71.9
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 6.5e-83 311.2 234 70.1
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 6.5e-83 311.2 231 71.0
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 8.4e-83 310.8 228 71.5
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 8.4e-83 310.8 228 71.5
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 8.4e-83 310.8 228 71.5
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 8.4e-83 310.8 236 67.4
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 1.1e-82 310.5 228 70.6
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 1.1e-82 310.5 228 70.6
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.1e-82 310.5 228 71.5
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.4e-82 310.1 228 71.5
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 1.4e-82 310.1 228 71.5
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 1.4e-82 310.1 228 71.5
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 1.4e-82 310.1 228 71.5
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 1.4e-82 310.1 228 71.5
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 2.5e-82 309.3 228 70.2
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 4.2e-82 308.5 228 71.1
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 5.5e-82 308.1 228 70.2
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 1.6e-81 306.6 230 70.9
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 1.6e-81 306.6 230 70.9
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 2.1e-81 306.2 223 71.3
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.7e-81 305.8 168 88.1
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 7.9e-81 304.3 179 83.8
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.0e-80 303.9 228 73.7
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.0e-80 303.9 228 73.7
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 1.3e-80 303.5 218 73.4
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 1.1e-79 300.4 230 70.0
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 3.3e-79 298.9 230 72.2
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 9.7e-79 297.4 229 70.7
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 6.3e-78 294.7 156 90.4
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 8.2e-78 294.3 230 67.4
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.8e-77 293.1 230 70.0
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 1.8e-77 293.1 180 78.3
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 2.5e-74 282.7 216 69.0
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.6e-73 278.5 228 68.9
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 3.0e-72 275.8 204 73.0
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 8.8e-72 274.2 217 68.2
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 1.4e-64 250.4 174 69.5
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.5e-63 246.9 201 63.2
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 3.3e-63 245.7 174 69.5
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 7.4e-63 244.6 174 69.5
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.7e-62 243.4 174 68.4
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.8e-62 241.9 238 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 2.9e-59 232.6 157 70.7
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 3.2e-58 229.2 179 63.7
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 5.5e-50 201.8 145 74.5
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 6.8e-48 194.9 150 60.7
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 8.8e-48 194.5 177 56.5
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.0e-39 166.8 150 65.3
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 5.4e-37 158.7 175 50.3
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 4.4e-31 139.0 77 75.3
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.4e-31 139.0 140 66.4
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.4e-29 134.0 127 66.9
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 4.9e-22 109.0 57 84.2
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 8.3e-22 108.2 136 52.2
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 7.8e-20 101.7 111 64.9
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 3.3e-10 69.7 44 81.8


User provided reference genes

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