Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.2e-110 403.3 210 100.0
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 5.6e-73 278.1 210 70.5
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 7.1e-68 261.2 211 65.9
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 7.1e-68 261.2 211 65.9
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.2e-62 243.8 206 62.1
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.0e-58 230.7 207 59.4
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.0e-58 229.2 191 60.2
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 9.6e-57 224.2 210 56.2
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 2.1e-56 223.0 186 59.7
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.4e-55 220.3 210 56.7
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 2.4e-55 219.5 207 57.0
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 4.0e-55 218.8 128 89.8
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 5.3e-55 218.4 206 54.9
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 9.0e-55 217.6 208 56.2
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 9.9e-54 214.2 216 55.6
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 6.4e-53 211.5 195 57.4
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 9.3e-52 207.6 206 55.8
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 2.1e-51 206.5 213 50.2
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 2.1e-51 206.5 193 54.9
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.7e-51 206.1 119 91.6
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 3.5e-51 205.7 211 50.2
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 7.8e-51 204.5 187 55.6
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 1.3e-50 203.8 208 51.9
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.7e-50 203.4 218 53.2
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.7e-50 203.4 187 53.5
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 3.0e-50 202.6 210 50.5
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 5.1e-50 201.8 147 70.7
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 8.7e-50 201.1 188 54.3
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 1.5e-49 200.3 194 52.6
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 4.3e-49 198.7 187 52.4
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 5.6e-49 198.4 200 53.5
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 7.3e-49 198.0 202 48.5
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.3e-48 197.2 206 51.5
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 2.8e-48 196.1 202 51.5
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 2.8e-48 196.1 177 56.5
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 8.1e-48 194.5 206 52.9
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.1e-47 194.1 204 49.5
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 1.4e-47 193.7 199 50.8
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.4e-47 193.0 207 48.3
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 3.1e-47 192.6 196 50.5
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 3.1e-47 192.6 207 51.7
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 3.1e-47 192.6 206 50.0
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 3.1e-47 192.6 192 51.6
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 5.3e-47 191.8 172 52.3
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 6.9e-47 191.4 213 50.2
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 6.9e-47 191.4 183 56.3
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.2e-46 190.7 204 51.5
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 2.0e-46 189.9 212 51.4
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 2.6e-46 189.5 207 48.8
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 3.4e-46 189.1 199 50.8
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 9.9e-46 187.6 213 48.8
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 8.4e-45 184.5 210 50.0
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 1.4e-44 183.7 202 51.0
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 1.9e-44 183.3 204 46.6
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.9e-44 183.3 204 46.6
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.4e-44 181.8 203 46.3
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.1e-43 179.9 213 50.2
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 2.1e-43 179.9 210 46.7
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 2.7e-43 179.5 204 46.1
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.5e-43 179.1 207 46.4
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 8.7e-42 174.5 202 46.0
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.5e-41 173.7 209 46.4
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 2.5e-41 172.9 202 48.5
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 2.5e-41 172.9 207 46.9
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 4.3e-41 172.2 209 46.9
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 9.6e-41 171.0 209 45.5
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 1.6e-40 170.2 184 50.5
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 6.2e-40 168.3 184 51.1
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 1.4e-39 167.2 202 46.0
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.4e-39 166.4 206 48.1
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 3.1e-39 166.0 184 49.5
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 3.1e-39 166.0 190 46.8
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 3.1e-39 166.0 182 48.9
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 4.5e-38 162.2 206 44.2
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 7.6e-38 161.4 199 49.2
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 6.5e-37 158.3 199 48.2
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 6.5e-37 158.3 198 44.9
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 8.4e-37 157.9 205 42.9
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.9e-36 156.8 192 45.3
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 3.2e-36 156.0 183 44.8
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 9.3e-36 154.5 208 43.3
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.7e-35 152.9 208 42.8
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.7e-35 152.9 208 42.8
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 6.0e-35 151.8 207 43.0
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 7.9e-35 151.4 208 43.3
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 7.9e-35 151.4 199 43.7
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 1.0e-34 151.0 210 43.3
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 1.3e-34 150.6 208 41.8
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 2.3e-34 149.8 199 41.7
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 3.9e-34 149.1 289 34.6
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 5.1e-34 148.7 207 41.1
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 5.1e-34 148.7 218 40.8
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 5.1e-34 148.7 208 42.8
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 5.1e-34 148.7 193 46.6
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 6.7e-34 148.3 208 42.3
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.7e-34 148.3 196 43.9
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.7e-34 148.3 196 43.9
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 7.4e-33 144.8 122 54.9
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-31 141.0 177 45.2
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.4e-31 140.6 153 52.9
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 5.3e-31 138.7 177 44.6
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 5.8e-30 135.2 209 35.9
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 5.8e-30 135.2 213 40.8
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.0e-29 134.4 222 40.1
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.1e-28 131.0 109 56.0
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.3e-25 119.4 91 61.5
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 2.2e-24 116.7 176 38.1
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 2.8e-24 116.3 175 37.1
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.1e-23 112.5 86 62.8
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 4.2e-20 102.4 205 35.1
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 1.6e-19 100.5 199 35.2
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 3.6e-19 99.4 59 89.8
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 3.0e-18 96.3 65 81.5
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 1.3e-16 90.9 206 32.5
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 2.2e-16 90.1 135 39.3
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 7.7e-14 81.6 153 35.9
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.2e-11 74.3 90 45.6
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.6e-09 66.6 62 59.7
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 2.4e-07 60.1 50 56.0


User provided reference genes

Program Settings