Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.8e-232 808.9 422 100.0
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 1.6e-135 486.9 405 64.0
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 3.4e-130 469.2 404 63.6
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 6.1e-127 458.4 430 58.4
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.9e-127 458.0 430 58.4
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 2.5e-112 409.8 417 55.4
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 2.6e-106 389.8 422 52.6
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.1e-99 367.9 415 49.9
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 5.3e-99 365.5 416 49.3
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 1.6e-98 364.0 414 49.5
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.5e-96 357.5 414 47.8
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 2.1e-95 353.6 412 49.0
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 3.4e-93 346.3 411 47.2
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 6.3e-92 342.0 417 45.1
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.8e-91 340.5 414 44.9
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 2.7e-90 336.7 448 46.0
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 2.7e-90 336.7 415 46.5
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 5.9e-90 335.5 404 45.5
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 1.0e-89 334.7 418 44.7
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.9e-88 330.5 366 49.5
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.6e-87 327.4 558 38.2
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 3.6e-87 326.2 370 48.6
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.7e-87 325.9 417 43.4
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.0e-86 324.7 448 45.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 1.2e-85 321.2 409 44.5
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 1.2e-85 321.2 409 44.7
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 1.5e-85 320.9 417 43.2
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.5e-85 320.9 543 38.1
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 5.7e-85 318.9 418 41.6
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 7.5e-85 318.5 409 43.0
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.3e-84 317.8 411 46.5
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 2.2e-84 317.0 416 45.2
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 8.3e-84 315.1 380 47.1
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.8e-83 313.9 417 42.7
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 4.5e-82 309.3 417 42.4
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 6.6e-81 305.4 407 43.5
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.1e-80 304.7 430 43.5
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 5.6e-80 302.4 411 42.8
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 1.2e-79 301.2 409 42.3
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 1.6e-79 300.8 369 45.3
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.6e-79 300.8 419 40.6
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 2.1e-79 300.4 417 42.0
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 3.6e-79 299.7 411 41.4
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 1.4e-78 297.7 411 41.1
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 6.8e-78 295.4 257 58.8
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 6.8e-78 295.4 419 43.0
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 6.8e-78 295.4 419 43.0
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.4e-77 292.7 410 42.9
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.2e-76 290.4 257 58.4
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 6.4e-76 288.9 417 39.8
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 8.3e-76 288.5 408 40.4
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 9.2e-75 285.0 413 41.4
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.2e-74 284.6 410 41.0
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.0e-73 281.6 420 38.6
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 1.3e-73 281.2 410 40.7
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 1.3e-73 281.2 346 43.6
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 6.6e-73 278.9 406 39.9
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 8.6e-73 278.5 412 39.1
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 5.6e-72 275.8 417 40.0
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.8e-70 270.8 413 39.5
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 3.1e-70 270.0 410 40.0
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 3.4e-69 266.5 407 39.3
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 7.5e-69 265.4 416 40.1
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.3e-68 264.6 345 42.0
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.3e-68 264.6 412 38.8
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.7e-68 264.2 383 40.2
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 3.2e-67 260.0 526 33.7
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 1.6e-66 257.7 399 39.3
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.3e-65 253.8 383 38.6
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 8.6e-65 251.9 376 41.2
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 9.5e-64 248.4 350 40.3
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 5.8e-61 239.2 404 37.6
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 9.9e-61 238.4 395 36.7
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 6.4e-60 235.7 549 30.4
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.4e-59 234.6 356 38.5
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.9e-59 234.2 392 38.3
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 2.4e-59 233.8 408 35.3
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 9.2e-59 231.9 408 35.0
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.2e-59 231.9 375 39.5
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.2e-58 231.5 381 39.4
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 1.6e-58 231.1 412 35.7
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 6.0e-58 229.2 405 35.3
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 1.0e-57 228.4 400 34.2
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 1.3e-57 228.0 406 35.0
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.1e-54 218.4 376 37.2
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 4.0e-54 216.5 343 36.7
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 5.2e-54 216.1 400 34.2
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.6e-50 204.5 396 34.8
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 5.1e-49 199.5 392 32.1
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 8.7e-49 198.7 169 56.8
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 2.0e-45 187.6 256 46.1
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 9.3e-43 178.7 278 40.6
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 2.7e-42 177.2 138 65.2
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 1.1e-40 171.8 203 41.9
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 4.8e-39 166.4 380 35.0
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 1.1e-38 165.2 401 28.7
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 3.8e-36 156.8 416 28.8
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 5.4e-35 152.9 298 36.2
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 5.4e-35 152.9 235 34.5
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 3.0e-33 147.1 251 37.5
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.2e-31 139.4 255 36.1
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 1.8e-30 137.9 140 45.0
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.1e-30 137.1 303 35.6
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 4.0e-30 136.7 303 34.7
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 5.3e-30 136.3 260 35.0
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 9.0e-30 135.6 303 34.0
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 7.9e-26 122.5 237 35.9
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 6.9e-22 109.4 249 34.5
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.3e-17 95.1 413 23.5
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 5.1e-17 93.2 120 45.8
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.4e-14 85.1 151 37.1
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 6.9e-14 82.8 261 29.1
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 9.0e-14 82.4 123 38.2
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 9.0e-14 82.4 123 38.2
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 2.2e-12 77.8 386 22.5
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 2.1e-10 71.2 263 24.3
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 6.7e-09 66.2 128 40.6
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.1e-08 65.5 91 38.5
Pp3c12_25780 Physcomitrium patens HOM05D058747 ORTHO05D007778 1.7e-07 61.6 263 21.7


User provided reference genes

Program Settings