Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 8.2e-88 327.0 164 100.0
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.2e-43 180.3 161 65.2
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 2.8e-43 179.1 103 87.4
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.9e-31 139.8 115 72.2
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 7.8e-30 134.4 93 74.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 5.8e-25 118.2 115 59.1
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.7e-24 116.7 90 64.4
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 2.3e-21 106.3 96 62.5
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 4.3e-20 102.1 130 50.0
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 6.2e-19 98.2 102 50.0
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 8.1e-19 97.8 130 49.2
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.8e-18 96.7 130 48.5
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.2e-18 95.1 130 47.7
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 6.8e-18 94.7 108 47.2
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 6.8e-18 94.7 95 55.8
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.5e-17 93.6 95 52.6
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.5e-17 93.6 95 52.6
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.4e-17 92.0 130 47.7
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 3.8e-16 89.0 84 54.8
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 6.4e-16 88.2 85 52.9
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 1.1e-15 87.4 103 49.5
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 5.4e-15 85.1 113 43.4
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 5.4e-15 85.1 111 43.2
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 7.1e-15 84.7 108 42.6
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 7.1e-15 84.7 74 54.1
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.6e-14 83.6 66 65.2
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 3.9e-13 79.0 109 39.4
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.1e-13 78.6 89 52.8
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 6.6e-13 78.2 86 44.2
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 8.7e-13 77.8 87 47.1
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 1.9e-12 76.6 87 47.1
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 2.5e-12 76.3 87 44.8
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.3e-12 75.9 105 39.0
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.3e-12 75.9 105 39.0
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 4.3e-12 75.5 68 52.9
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 4.3e-12 75.5 95 44.2
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 4.3e-12 75.5 96 47.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 5.6e-12 75.1 69 49.3
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 5.6e-12 75.1 69 49.3
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.6e-12 75.1 89 50.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 5.6e-12 75.1 102 39.2
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 5.6e-12 75.1 112 38.4
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 9.6e-12 74.3 95 43.2
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.2e-11 73.9 71 50.7
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.2e-11 73.9 85 45.9
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-11 73.9 102 40.2
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 1.6e-11 73.6 102 39.2
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.6e-11 73.6 68 51.5
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 2.1e-11 73.2 102 39.2
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 2.1e-11 73.2 95 44.2
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.1e-11 73.2 102 39.2
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 3.6e-11 72.4 103 38.8
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 3.6e-11 72.4 103 41.7
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.7e-11 72.0 103 39.8
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 6.2e-11 71.6 103 38.8
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 6.2e-11 71.6 97 42.3
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 8.1e-11 71.2 97 41.2
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.8e-10 70.1 72 50.0
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.1e-10 69.3 95 37.9
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.1e-10 69.3 122 37.7
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.1e-10 69.3 122 37.7
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 3.1e-10 69.3 114 41.2
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 6.9e-10 68.2 95 38.9
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 9.0e-10 67.8 72 45.8
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.2e-09 67.4 70 47.1
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.5e-09 67.0 102 38.2
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.5e-09 67.0 95 36.8
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 2.6e-09 66.2 102 36.3
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 2.6e-09 66.2 100 44.0
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 2.6e-09 66.2 117 36.8
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 2.6e-09 66.2 72 43.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 3.4e-09 65.9 95 40.0
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.4e-09 65.9 117 39.3
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 3.4e-09 65.9 72 48.6
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 4.4e-09 65.5 108 38.9
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 4.4e-09 65.5 108 38.9
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 4.4e-09 65.5 108 33.3
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 4.4e-09 65.5 111 39.6
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 7.6e-09 64.7 72 45.8
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 7.6e-09 64.7 72 45.8
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 7.6e-09 64.7 122 34.4
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 7.6e-09 64.7 101 38.6
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 9.9e-09 64.3 72 45.8
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 9.9e-09 64.3 124 33.9
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 9.9e-09 64.3 96 39.6
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 9.9e-09 64.3 95 37.9
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 2.9e-08 62.8 96 39.6
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 2.9e-08 62.8 102 36.3
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 3.8e-08 62.4 72 47.2
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 3.8e-08 62.4 72 45.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 3.8e-08 62.4 97 38.1
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.8e-08 62.4 97 38.1
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 4.9e-08 62.0 102 37.3
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 6.4e-08 61.6 72 44.4
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 6.4e-08 61.6 92 40.2
SGA_v2.0_scaffold23G10125 Striga asiatica HOM05D000679 ORTHO05D000137 6.4e-08 61.6 31 90.3
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 8.4e-08 61.2 109 38.5
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 8.4e-08 61.2 109 37.6
SGA_v2.0_scaffold160G37744 Striga asiatica HOM05D002262 ORTHO05D000137 8.4e-08 61.2 31 90.3
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 1.1e-07 60.8 74 44.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.4e-07 60.5 72 44.4
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.9e-07 60.1 102 34.3
SGA_v2.0_scaffold2356G54104 Striga asiatica HOM05D000679 ORTHO05D000137 2.4e-07 59.7 30 90.0
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 3.2e-07 59.3 70 44.3
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 5.4e-07 58.5 108 37.0
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 5.4e-07 58.5 104 34.6
SGA_v2.0_scaffold437G51617 Striga asiatica HOM05D000679 ORTHO05D000137 5.4e-07 58.5 31 87.1
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 7.1e-07 58.2 109 35.8
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 7.1e-07 58.2 104 34.6
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 9.3e-07 57.8 72 43.1
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.2e-06 57.4 67 46.3
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.1e-06 56.6 110 35.5
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.5e-06 55.8 107 39.3
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 4.6e-06 55.5 107 38.3
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 7.8e-06 54.7 75 40.0


User provided reference genes

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