Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 9.8e-211 736.5 359 100.0
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-203 712.6 359 97.5
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.9e-185 652.5 357 88.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 5.8e-179 630.9 354 86.2
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.4e-178 627.5 379 82.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.4e-178 627.1 354 85.0
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.5e-174 615.5 351 83.2
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.6e-171 605.5 351 81.8
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.5e-171 604.7 349 81.9
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.1e-164 582.0 352 78.7
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.0e-164 581.6 349 80.2
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.0e-163 579.3 349 77.1
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.6e-163 578.9 348 78.4
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.9e-162 575.5 351 78.1
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 4.2e-161 571.6 344 79.4
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 3.5e-160 568.5 385 71.4
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.0e-159 567.0 352 76.7
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.8e-159 566.2 349 77.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.9e-158 562.8 353 76.5
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.3e-158 562.0 352 75.3
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.3e-158 561.6 357 76.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.6e-157 559.7 346 77.2
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.7e-157 558.5 352 76.1
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 8.2e-157 557.4 354 75.4
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-156 556.6 346 76.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.4e-156 556.6 346 76.3
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 3.1e-156 555.4 347 76.4
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.0e-156 555.1 351 74.9
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 6.9e-156 554.3 349 76.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 6.9e-156 554.3 353 75.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.0e-155 552.7 355 74.6
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.6e-155 552.4 358 76.0
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.8e-155 551.2 349 75.4
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 7.6e-155 550.8 346 76.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-154 550.1 349 75.4
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.2e-154 549.3 360 74.2
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 8.4e-154 547.4 358 74.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.4e-154 547.4 358 74.6
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.4e-153 546.6 305 84.6
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.9e-153 546.2 357 74.8
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.5e-153 545.8 355 73.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.5e-153 545.8 358 74.3
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.2e-153 545.0 354 73.4
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.5e-153 544.7 352 75.9
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 7.1e-153 544.3 354 73.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 6.0e-152 541.2 325 77.2
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 7.9e-152 540.8 357 73.1
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.3e-151 540.0 354 73.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 8.7e-151 537.3 409 65.5
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.5e-150 536.6 347 74.6
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.3e-150 535.4 356 72.8
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 3.3e-150 535.4 356 73.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 9.7e-150 533.9 356 73.3
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 3.7e-149 531.9 355 72.7
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.4e-148 529.3 358 72.6
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.2e-147 526.9 355 72.7
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.2e-147 526.9 362 71.8
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.2e-147 526.9 353 72.2
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.2e-147 526.9 363 70.0
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.5e-147 526.6 365 71.0
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.0e-147 526.2 349 72.5
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.5e-147 525.0 361 71.7
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 5.9e-147 524.6 352 72.4
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.0e-146 523.9 323 78.0
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.3e-146 523.5 379 68.6
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.7e-146 523.1 357 71.4
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.0e-146 521.5 359 72.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 5.0e-146 521.5 341 73.6
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-145 519.6 303 80.9
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.9e-145 519.6 359 71.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.7e-144 515.8 354 72.0
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-143 513.5 346 72.0
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.9e-143 511.9 361 70.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 6.7e-143 511.1 354 71.5
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.3e-142 508.8 357 68.9
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 3.3e-142 508.8 349 71.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 4.3e-142 508.4 345 69.6
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 6.3e-141 504.6 305 78.7
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.4e-140 503.4 334 73.4
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.4e-140 502.7 362 69.1
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.0e-139 499.6 349 66.5
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 3.4e-139 498.8 348 68.1
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 7.7e-139 497.7 350 66.6
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.0e-138 497.3 359 68.2
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.3e-138 496.9 373 65.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.2e-138 496.1 363 68.0
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.4e-137 493.4 349 66.2
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.9e-137 493.0 357 67.2
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.2e-137 492.3 316 75.0
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.5e-137 491.5 357 65.0
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.2e-137 491.1 303 77.2
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 7.2e-137 491.1 276 83.7
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.6e-136 488.8 349 65.3
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.0e-135 487.3 345 66.7
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.8e-135 486.5 350 65.4
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 5.1e-135 485.0 345 65.2
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-134 483.8 349 64.8
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 4.4e-134 481.9 345 65.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 9.7e-134 480.7 356 65.7
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-132 476.1 338 70.4
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 5.3e-132 474.9 349 63.6
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.1e-132 474.2 348 64.7
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.2e-131 473.8 312 73.7
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.0e-130 470.7 328 69.5
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.7e-130 469.9 328 69.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.2e-130 469.5 335 70.1
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 8.5e-130 467.6 357 63.3
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-128 463.4 304 72.4
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.3e-127 459.5 348 65.2
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.2e-127 458.4 263 81.4
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-126 457.2 330 64.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.5e-123 445.7 329 67.2
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.7e-123 444.5 348 61.8
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 6.1e-120 434.9 328 65.5
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 4.8e-117 425.2 248 81.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 6.5e-114 414.8 350 59.7
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 7.5e-110 401.4 250 72.4
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-109 400.2 477 45.9
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.4e-108 397.1 245 76.7
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.4e-108 396.4 221 84.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.5e-105 386.3 391 50.9
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-104 383.3 328 61.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.0e-103 380.9 259 73.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.8e-103 380.2 378 54.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 6.8e-103 378.3 245 74.3
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.6e-102 376.3 381 55.4
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.2e-101 373.2 393 51.7
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 9.2e-100 367.9 254 69.7
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 5.6e-97 358.6 206 81.6
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.6e-97 358.6 216 81.0
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.1e-96 356.7 417 48.0
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.8e-95 353.6 295 59.0
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 9.8e-94 347.8 356 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 4.9e-93 345.5 354 50.8
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 6.4e-93 345.1 287 62.7
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 7.8e-91 338.2 298 55.0
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 7.8e-91 338.2 291 60.5
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 8.0e-88 328.2 243 64.6
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.6e-81 305.4 197 75.1
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.3e-81 305.1 302 54.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-80 304.3 193 76.7
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-79 301.2 223 67.3
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.9e-76 290.4 192 68.2
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 2.7e-75 286.6 332 50.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.7e-74 283.9 275 49.5
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.5e-73 280.8 193 72.0
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.8e-64 249.2 193 64.8
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.9e-60 237.3 134 82.8
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 9.0e-55 218.4 170 62.9
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 8.4e-53 211.8 337 42.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.0e-50 204.9 126 74.6
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.2e-46 191.4 328 41.5
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 3.4e-46 189.9 212 52.8
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 5.5e-44 182.6 115 75.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.8e-42 177.6 347 31.7
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.0e-38 164.1 223 37.2
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 7.6e-38 162.2 156 50.0
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.8e-37 159.8 302 29.8
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-34 151.8 89 77.5
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.3e-25 120.2 207 33.3
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 6.1e-19 99.4 68 66.2
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.0e-18 98.6 77 63.6
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 4.8e-16 89.7 69 58.0
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.1e-15 88.6 69 58.0
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.2e-13 80.9 77 51.9
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.5e-13 79.3 40 92.5
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.9e-12 77.8 49 71.4
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.5e-12 76.3 79 48.1
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 2.2e-08 64.3 47 63.8
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.4e-07 60.8 53 52.8
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.2e-06 58.5 53 50.9


User provided reference genes

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