Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.1e-248 862.8 417 100.0
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.3e-190 669.8 417 77.2
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 4.2e-189 664.8 417 75.5
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.4e-187 659.8 420 75.5
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 5.7e-186 654.4 415 76.6
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.1e-184 650.2 401 76.3
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.6e-183 646.4 418 74.6
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 4.5e-183 644.8 420 72.6
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.0e-182 643.7 410 75.1
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.2e-182 642.5 409 74.3
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 5.0e-182 641.3 412 73.5
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 8.5e-182 640.6 416 72.6
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 8.5e-182 640.6 417 72.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.5e-181 639.0 387 77.5
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 3.2e-181 638.6 417 72.9
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 4.2e-181 638.3 416 72.6
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 7.2e-181 637.5 386 77.2
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 1.4e-179 633.3 415 71.6
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 2.3e-179 632.5 410 73.4
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.3e-179 632.5 406 72.9
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 3.0e-179 632.1 416 72.4
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.1e-178 630.2 406 72.4
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.5e-178 629.8 415 71.3
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 4.4e-178 628.2 414 70.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 5.7e-178 627.9 420 71.4
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.3e-177 626.7 410 72.4
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 2.8e-177 625.5 403 72.7
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 2.8e-177 625.5 413 70.9
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 3.7e-177 625.2 410 70.5
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.8e-177 624.8 389 76.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.4e-176 623.2 419 72.1
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.2e-175 620.2 411 71.5
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.2e-175 620.2 418 71.1
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 3.5e-175 618.6 413 71.2
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 4.5e-175 618.2 410 71.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 7.7e-175 617.5 422 71.3
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-174 615.1 412 71.8
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 5.0e-174 614.8 403 71.2
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 8.5e-174 614.0 464 65.5
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.9e-173 612.8 411 71.5
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 2.5e-173 612.5 408 70.6
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 3.2e-173 612.1 415 67.7
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 2.7e-172 609.0 406 70.9
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.6e-172 608.6 410 70.7
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 6.1e-172 607.8 419 69.2
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.4e-171 606.7 414 69.6
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.4e-171 606.7 420 68.6
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.4e-171 606.7 415 70.1
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 4.0e-171 605.1 409 68.9
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 8.8e-171 604.0 403 70.7
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 8.8e-171 604.0 419 67.8
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.5e-170 603.2 412 69.7
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 2.6e-170 602.4 420 68.6
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 2.6e-170 602.4 410 70.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 5.7e-170 601.3 414 69.1
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 7.5e-170 600.9 406 70.4
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.3e-169 600.1 412 68.9
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 8.3e-169 597.4 413 67.1
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.1e-168 597.0 402 72.6
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.4e-168 595.9 418 69.6
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 3.1e-168 595.5 411 68.9
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 2.0e-167 592.8 423 68.6
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.0e-167 592.8 383 72.3
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.5e-167 592.0 418 68.2
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 5.9e-167 591.3 439 65.6
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 7.7e-167 590.9 409 70.9
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.2e-166 589.3 418 65.3
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 5.0e-166 588.2 400 68.8
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 5.0e-166 588.2 417 66.2
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 8.5e-166 587.4 465 63.9
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 1.0e-163 580.5 415 67.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 5.2e-163 578.2 386 68.9
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 6.8e-163 577.8 417 65.7
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-162 577.0 414 67.6
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 7.5e-162 574.3 370 69.7
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.3e-161 573.5 418 65.6
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.8e-160 569.7 414 65.0
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 2.4e-160 569.3 410 68.3
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 5.4e-160 568.2 406 67.0
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.9e-159 564.7 412 65.3
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.1e-157 560.5 409 65.3
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.9e-157 559.7 344 73.0
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 4.0e-155 552.0 374 68.2
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.0e-154 549.7 343 71.1
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 2.9e-153 545.8 343 70.6
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 3.7e-153 545.4 300 81.7
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 3.7e-153 545.4 404 61.9
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.5e-149 533.5 373 69.4
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 2.5e-149 532.7 414 64.0
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.8e-148 529.3 368 69.0
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.2e-148 528.1 368 68.5
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.6e-143 513.5 415 62.9
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 9.5e-141 504.2 444 57.9
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.6e-140 502.3 369 66.9
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 4.0e-139 498.8 374 63.6
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-138 496.1 420 62.4
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 2.9e-137 492.7 336 66.4
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 2.1e-132 476.5 349 68.5
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-132 475.7 418 59.8
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-132 475.3 362 66.0
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 6.8e-131 471.5 349 68.2
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 9.2e-128 461.1 319 69.0
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.1e-127 459.9 307 73.0
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.1e-125 454.1 421 52.3
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.5e-125 453.8 419 52.5
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.6e-124 449.1 389 59.4
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.1e-123 447.6 413 54.2
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.8e-123 446.8 392 58.9
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.8e-123 446.8 373 56.3
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.2e-121 439.9 375 56.0
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.1e-119 433.3 320 63.8
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.7e-119 433.0 409 52.1
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-116 421.8 247 78.1
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.0e-115 417.9 416 54.3
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 4.8e-108 395.6 255 72.9
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 8.4e-105 384.8 439 45.8
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 7.9e-103 378.3 274 65.7
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 7.4e-101 371.7 283 59.0
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.1e-99 366.3 415 46.5
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.9e-97 359.8 269 67.3
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-95 352.1 348 54.6
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.0e-94 351.3 199 78.9
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-94 349.0 272 63.6
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 6.7e-94 348.6 200 77.0
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-88 330.1 208 75.5
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-87 326.6 208 73.6
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.7e-85 318.9 205 73.7
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 2.6e-77 293.5 296 46.3
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-77 292.7 167 79.0
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.3e-70 270.4 401 39.4
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 9.1e-67 258.5 165 71.5
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-61 240.4 194 62.9
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-61 239.6 150 75.3
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-61 239.6 150 75.3
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-61 239.6 150 75.3
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-60 236.1 150 74.7
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.2e-56 222.2 157 68.8
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 3.1e-51 206.8 249 46.6
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.1e-47 194.1 119 73.1
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-45 188.3 184 53.8
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.8e-45 185.3 96 84.4
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 8.3e-36 155.6 108 67.6
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 5.4e-35 152.9 86 76.7
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.0e-34 151.0 100 66.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.4e-27 127.5 84 65.5
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-27 127.1 74 79.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-23 115.2 145 45.5
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-18 96.3 146 44.5
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.2e-13 82.0 84 52.4
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 2.9e-12 77.4 107 39.3
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.1e-11 75.5 242 28.1
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 3.2e-11 73.9 48 68.8
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.6e-10 71.6 70 58.6
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-10 70.1 55 58.2
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.7e-09 68.2 43 65.1
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 3.3e-08 63.9 182 26.4
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 1.6e-07 61.6 36 75.0
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 3.6e-07 60.5 235 23.8
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 4.0e-06 57.0 46 56.5


User provided reference genes

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