Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 7.2e-62 240.4 117 100.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.5e-59 232.6 117 96.6
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.8e-52 209.1 117 87.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 8.0e-37 157.1 117 64.1
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 8.9e-36 153.7 117 60.7
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 8.9e-36 153.7 117 61.5
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.7e-35 151.0 74 97.3
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.7e-34 149.4 116 57.8
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 4.1e-33 144.8 117 58.1
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 4.1e-33 144.8 117 58.1
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 5.4e-33 144.4 117 57.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 7.0e-33 144.1 117 58.1
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 7.0e-33 144.1 117 59.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.6e-32 142.9 117 57.3
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.6e-32 142.9 117 55.6
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 3.5e-32 141.7 117 55.6
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.5e-32 141.4 118 57.6
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 8.6e-31 137.1 119 57.1
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 8.6e-31 137.1 120 57.5
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.5e-30 136.3 118 57.6
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.9e-30 136.0 117 53.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.5e-30 135.6 118 52.5
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 3.3e-30 135.2 113 56.6
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.3e-30 135.2 114 56.1
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 4.3e-30 134.8 114 55.3
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 9.5e-30 133.7 117 54.7
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.2e-29 133.3 120 55.0
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 1.2e-29 133.3 118 53.4
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 1.6e-29 132.9 124 52.4
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 1.6e-29 132.9 124 52.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.1e-29 132.5 121 54.5
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.1e-29 132.5 121 54.5
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.7e-29 131.3 124 51.6
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 4.7e-29 131.3 120 52.5
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.1e-29 131.0 121 53.7
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.1e-29 131.0 121 53.7
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 8.0e-29 130.6 117 53.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 8.0e-29 130.6 120 53.3
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 8.0e-29 130.6 120 52.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 8.0e-29 130.6 124 51.6
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 53.3
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 53.3
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 53.3
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 4.0e-28 128.3 120 52.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 4.0e-28 128.3 117 53.8
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 5.2e-28 127.9 125 50.4
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.8e-28 127.5 78 76.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 8.9e-28 127.1 120 52.5
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 8.9e-28 127.1 120 52.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.2e-27 126.7 117 52.1
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.2e-27 126.7 125 50.4
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.5e-27 126.3 116 53.4
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 56.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 56.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.5e-27 126.3 120 56.7
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.0e-27 125.9 120 51.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.6e-27 125.6 120 52.5
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 4.4e-27 124.8 121 50.4
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 5.8e-27 124.4 120 52.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 5.8e-27 124.4 118 52.5
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 7.5e-27 124.0 120 51.7
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 50.8
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 50.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 52.5
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 50.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 50.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 50.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 50.8
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.7e-26 122.9 117 50.4
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 50.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 50.8
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 50.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 3.7e-26 121.7 120 50.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.7e-26 121.7 120 50.0
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 4.9e-26 121.3 120 50.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 4.9e-26 121.3 120 50.0
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 4.9e-26 121.3 121 53.7
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.1e-25 120.2 118 46.6
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.1e-25 120.2 122 50.0
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-25 119.0 120 50.0
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 3.2e-25 118.6 120 50.0
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.2e-25 118.6 118 49.2
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.4e-25 117.9 122 48.4
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 7.0e-25 117.5 117 47.9
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.2e-24 116.7 120 49.2
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.2e-24 116.7 116 47.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.6e-24 116.3 115 49.6
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 6.0e-24 114.4 114 50.9
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.0e-23 113.6 111 50.5
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.0e-23 113.6 110 52.7
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 6.6e-23 110.9 118 48.3
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.5e-22 109.0 106 51.9
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 5.6e-22 107.8 121 45.5
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 7.3e-22 107.5 111 49.5
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 8.0e-21 104.0 116 45.7
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.8e-20 102.8 121 44.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 2.3e-20 102.4 111 45.9
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 4.0e-20 101.7 96 47.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 5.2e-20 101.3 117 45.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 6.8e-20 100.9 121 44.6
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.5e-19 99.8 94 47.9
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.6e-19 99.0 124 41.9
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.3e-18 96.7 124 44.4
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.2e-18 95.9 120 40.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.9e-18 95.5 103 47.6
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.5e-14 83.2 119 34.5
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.9e-14 82.8 154 33.1
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.2e-13 80.1 66 53.0
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.7e-13 78.2 62 54.8
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 4.7e-13 78.2 80 50.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 8.1e-13 77.4 69 56.5
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 8.1e-13 77.4 54 61.1
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.8e-12 76.3 82 46.3
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 8.9e-12 73.9 122 33.6
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 8.9e-12 73.9 106 34.9
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.0e-11 72.8 86 41.9
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.6e-11 72.4 66 50.0
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 6.4e-10 67.8 53 50.9
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.4e-09 66.6 58 50.0
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.1e-09 65.1 53 52.8
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.7e-08 62.4 65 52.3
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 3.5e-08 62.0 67 49.3
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 6.0e-08 61.2 85 42.4
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 7.8e-08 60.8 65 50.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.3e-07 59.3 56 51.8
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.0e-07 58.9 57 47.4
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 5.1e-07 58.2 40 60.0
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.5e-06 55.8 73 38.4
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.5e-06 55.8 75 42.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 5.6e-06 54.7 53 49.1
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 7.3e-06 54.3 58 41.4


User provided reference genes

Program Settings