Gene: Sopen12g025160

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g025160
  • Transcript Identifier Sopen12g025160.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 64129630-64133767 : positive

Gene Family Information

  • ID HOM05D005823
  • #Genes/#Species 134/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g025160.1

Descriptions

  • Description Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves. | like SEX4 1 (LSF1) | FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity | INVOLVED IN: starch catabolic process | LOCATED IN: starch grain, chloroplast, chloroplast stroma | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase, catalytic domain , PDZ/DHR/GLGF , Dual specificity phosphatase, subgroup, catalytic domain | BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006470
IEA
InterProprotein dephosphorylation
GO:0005983
IEA
InterProstarch catabolic process
GO:0016311
IEA
InterProdephosphorylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008138
IEA
InterProprotein tyrosine/serine/threonine phosphatase activity
GO:0019203
ISO
PLAZA Integrative Orthologycarbohydrate phosphatase activity AT3G01510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G01510
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G01510
GO:0043036
ISO
PLAZA Integrative Orthologystarch grain AT3G01510
GO:0009569
ISO
PLAZA Integrative Orthologychloroplast starch grain AT3G01510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029021 Protein-tyrosine phosphatase-like
IPR013783 Immunoglobulin-like fold
IPR020422 Dual specificity protein phosphatase domain
IPR032640 AMP-activated protein kinase, glycogen-binding domain
IPR014756 Immunoglobulin E-set
IPR030066 Putative phosphatase LSF1, chloroplastic
IPR000340 Dual specificity phosphatase, catalytic domain
Mapman id Description
3.2.3.2.3 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.alpha-amylase-binding scaffold protein (LSF1)