Gene: AT3G01510

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G01510
  • Transcript Identifier AT3G01510.1
  • Gene Type Coding gene
  • Location Chr3 : 198855-201682 : negative

Gene Family Information

  • ID HOM05D005823
  • #Genes/#Species 134/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G01510.1
  • symbol LSF1
  • uniprot F4J117

Descriptions

  • Description like SEX4 1
  • Computational description like SEX4 1 (LSF1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: starch catabolic process; LOCATED IN: starch grain, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), PDZ/DHR/GLGF (InterPro:IPR001478), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G52180.1); Has 834 Blast hits to 834 proteins in 152 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 61; Plants - 322; Viruses - 12; Other Eukaryotes - 115 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005983
IMP
IBA
IEA
Gene Ontologystarch catabolic process1 2
GO:0005983
IEA
InterProstarch catabolic process
GO:0006470
IEA
Gene Ontologyprotein dephosphorylation
GO:0006470
IEA
InterProprotein dephosphorylation
GO:0016311
IEA
GOA Databasedephosphorylation
GO:0016311
IEA
InterProdephosphorylation
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008138
IEA
Gene Ontologyprotein tyrosine/serine/threonine phosphatase activity
GO:0008138
IEA
InterProprotein tyrosine/serine/threonine phosphatase activity
GO:0005515
IEA
InterProprotein binding
GO:0004721
IEA
GOA Databasephosphoprotein phosphatase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0019203
IMP
Gene Ontologycarbohydrate phosphatase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
IBA
Gene Ontologychloroplast1 2 3
GO:0043036
IDA
IBA
Gene Ontologystarch grain1 2
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma1 4
GO:0009569
IDA
Gene Ontologychloroplast starch grain1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013783 Immunoglobulin-like fold
IPR036034 PDZ superfamily
IPR032640 AMP-activated protein kinase, glycogen-binding domain
IPR000340 Dual specificity phosphatase, catalytic domain
IPR029021 Protein-tyrosine phosphatase-like
IPR020422 Dual specificity protein phosphatase domain
IPR014756 Immunoglobulin E-set
IPR030066 Putative phosphatase LSF1, chloroplastic
Mapman id Description
3.2.3.2.3 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.alpha-amylase-binding scaffold protein (LSF1)