InterPro domain: IPR014756
General Information
- Identifier IPR014756
- Description Immunoglobulin E-set
- Number of genes 6018
- Gene duplication stats Loading...
Abstract
The immunoglobulin (Ig) like fold, which consists of a beta-sandwich of seven or more strands in two sheets with a greek-key topology, is one of the most common protein modules found in animals. Many different unrelated proteins share an Ig-like fold, which is often involved in interactions, commonly with other Ig-like domains via their beta-sheets [ 1 ]. Of these, the "early" set (E set) domains are possibly related to the immunoglobulin ( IPR007110 ) and/or fibronectin type III ( IPR003961 ) Ig-like protein superfamilies. Ig-like E set domains include:
- C-terminal domain of certain transcription factors, such as the pro-inflammatory transcription factor NF-kappaB, and the T-cell transcription factors NFAT1 and NFAT5 [ 2 ].
- Ig-like domains of sugar-utilising enzymes, such as galactose oxidase (C-terminal domain), sialidase (linker domain), and maltogenic amylase (N-terminal domain).
- C-terminal domain of arthropod haemocyanin, where many loops are inserted into the fold. These proteins act as dioxygen-transporting proteins.
- C-terminal domain of class II viral fusion proteins. These envelope glycoproteins are responsible for membrane fusion with target cells during viral invasion.
- Cytomegaloviral US (unique short) proteins. These type I membrane proteins help suppress the host immune response by modulating surface expression of MHC class I molecules [ 3 ].
- Molybdenium-containing oxidoreductase-like dimerisation domain found in enzymes such as sulphite reductase.
- ML domains found in cholesterol-binding epididymal secretory protein E1, and in a major house-dust mite allergen; ML domains are implicated in lipid recognition, particularly the recognition of pathogen-related products.
- Rho-GDI-like signalling proteins, which regulate the activity of small G proteins [ 4 ].
- Cytoplasmic domain of inward rectifier potassium channels such as Girk1 and Kirbac1.1. These channels act as regulators of excitability in eukaryotic cells.
- N-terminal domain of transglutaminases, including coagulation factor XIII; many loops are inserted into the fold in these proteins. These proteins act to catalyse the cross-linking of various protein substrates [ 5 ].
- Filamin repeat rod domain found in proteins such as the F-actin cross-linking gelation factor ABP-120. These proteins interact with a variety of cellular proteins, acting as signalling scaffolds [ 6 ].
- Arrestin family of proteins, which contain a tandem repeat of two elaborated Ig-like domains contacting each other head-to-head. These proteins are key to the redirection of GPCR signals to alternative pathways [ 7 ].
- C-terminal domain of arginine-specific cysteine proteases, such as Gingipain-R, which act as major virulence factors of Porphyromonas gingivalis (Bacteroides gingivalis).
- Copper-resistance proteins, such as CopC, which act as copper-trafficking proteins [ 8 ].
- Cellulosomal scaffoldin proteins, such as CipC module x2.1. These proteins act as scaffolding proteins of cellulosomes, which contain cellulose-degrading enzymes [ 9 ].
- Quinohaemoprotein amine dehydrogenases (A chain), which contain a tandem repeat of two Ig-like domains. These proteins function in electron transfer reactions.
- Internalin Ig-like domains, which are truncated and fused to a leucine-rich repeat domain. These proteins are required for host cell invasion of Listeria species.
1. The immunoglobulin fold. Structural classification, sequence patterns and common core. J. Mol. Biol. 242, 309-20
2. Nuclear factor-kappaB: the enemy within. Cancer Cell 6, 203-8
3. Structural and functional analysis of human cytomegalovirus US3 protein. J. Virol. 78, 413-23
4. Uncoupling of inhibitory and shuttling functions of rho GDP dissociation inhibitors. J. Biol. Chem. 280, 4674-83
5. Biochemical mechanisms for a possible involvement of the transglutaminase activity in the pathogenesis of the polyglutamine diseases: minireview article. Amino Acids 26, 431-4
6. The many faces of filamin: a versatile molecular scaffold for cell motility and signalling. Nat. Cell Biol. 6, 1034-8
7. The molecular acrobatics of arrestin activation. Trends Pharmacol. Sci. 25, 105-11
8. A redox switch in CopC: an intriguing copper trafficking protein that binds copper(I) and copper(II) at different sites. Proc. Natl. Acad. Sci. U.S.A. 100, 3814-9
9. Cellulolysis is severely affected in Clostridium cellulolyticum strain cipCMut1. Mol. Microbiol. 51, 589-98