Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen03g019840 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 10 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Spenn-ch03 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr12.874 chr12 + View
Acer truncatum Atru.chr8.1764 chr8 - View
Actinidia chinensis Actinidia03846 Lachesis_group17 - View
Arabidopsis lyrata AL6G13910 scaffold_6 + View
Avicennia marina MSTRG.9145 ScioBoG_11560_HRSCAF_11609 - View
Avicennia marina MSTRG.8127 ScioBoG_102841_HRSCAF_103114 - View
Aquilegia oxysepala Aqoxy2G01695 CHR02 - View
Arabidopsis thaliana AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A)%2C AT1G60650 (AtRZ-1b)%2C AT5G04280 (AtRZ-1c). RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C glycine rich protein (InterPro:IPR015465)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT1G60650.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica napus C03p01930 C03 + View
Brassica napus A03p01600 A03 + View
Brassica oleracea BolC3t12747H C3 + View
Brassica rapa BraA03t09534Z A03 + View
Camellia sinensis var. sinensis CSS0005536 glycine-rich RNA-binding family protein [Populus trichocarpa] Chr7 + View
Camellia sinensis var. sinensis CSS0027147 glycine-rich RNA-binding family protein [Populus trichocarpa] Chr1 - View
Cannabis sativa CANSAT80G2867 NC_044372.1 - View
Coffea canephora Cc02_g10770 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain chr2 - View
Citrus clementina Ciclev10032520m.g scaffold_4 + View
Cardamine hirsuta CARHR209000 RNA-binding protein Chr6 - View
Carya illinoinensis CiPaw.01G267500 KOG0109 - RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains Chr01 - View
Carya illinoinensis CiPaw.02G171600 PTHR24012//PTHR24012:SF459 - FAMILY NOT NAMED // RNA-BINDING PROTEIN 4F Chr02 - View
Citrullus lanatus ClCG08G007820 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain LENGTH=292 CG_Chr08 + View
Cucumis melo MELO3C012401.2 Glycine-rich RNA-binding family protein chr10 + View
Cucumis melo MELO3C019833.2 Glycine-rich RNA-binding family protein chr03 - View
Carica papaya Cpa.g.sc53.146 supercontig_53 + View
Capsella rubella Carub.0006s0323 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) scaffold_6 + View
Cucumis sativus L. CsaV3_2G020900 Glycine-rich RNA-binding protein like chr2 + View
Daucus carota DCAR_006405 hypothetical protein DCARv2_Chr2 - View
Durio zibethinus Duzib114G0897 NW_019167926.1 + View
Durio zibethinus Duzib128G0911 NW_019168481.1 + View
Erigeron canadensis ECA238G2158 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.J01044 Chr10 - View
Erythranthe guttata Migut.F01713 scaffold_6 + View
Eutrema salsugineum Thhalv10015645m.g PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) scaffold_2 + View
Fragaria x ananassa FAN06G5022 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) Fvb7-2 - View
Fragaria x ananassa FAN03G0654 KOG0107 - Alternative splicing factor SRp20/9G8 (RRM superfamily) Fvb7-3 + View
Fragaria x ananassa FAN10G1475 KOG0107 - Alternative splicing factor SRp20/9G8 (RRM superfamily) Fvb7-1 - View
Fragaria vesca FvH4_7g18520 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) Fvb7 - View
Gossypium hirsutum Gohir.A10G201200 PTHR24012//PTHR24012:SF459 - FAMILY NOT NAMED // RNA-BINDING PROTEIN 4F A10 - View
Gossypium hirsutum Gohir.D10G209000 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) D10 - View
Gossypium raimondii Gorai.011G235100 Chr11 - View
Helianthus annuus HanXRQChr14g0456531 Probable RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain HanXRQChr14 - View
Lonicera japonica Lj2A22G66 GWHAAZE00000002 + View
Lonicera japonica Lj3A937G87 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_2_113200 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) Lsat_1_v8_lg_2 - View
Malus domestica MD07G1168200 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Chr07 - View
Malus domestica MD01G1101500 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Chr01 - View
Manihot esculenta Manes.10G051200 Chromosome10 + View
Nelumbo nucifera Nn6g35249 chr6 - View
Nicotiana tabacum Nitab4.5_0002285g0020 Zinc finger, CCHC-type, Nucleotide-binding, alpha-beta plait, RNA recognition motif domain Nitab4.5_0002285 + View
Nicotiana tabacum Nitab4.5_0001450g0020 Zinc finger, CCHC-type, Nucleotide-binding, alpha-beta plait, RNA recognition motif domain Nitab4.5_0001450 - View
Petunia axillaris Peaxi162Scf00253g00327 Glycine-rich RNA-binding protein 10 Peaxi162Scf00253 - View
Punica granatum PGR044G1831 NC_045134.1 - View
Prunus persica Prupe.2G206800 Pp02 - View
Papaver somniferum PSO339G1141 NC_039366.1 + View
Papaver somniferum PSO801G0725 NW_020628818.1 - View
Populus trichocarpa Potri.010G228700 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) Chr10 + View
Populus trichocarpa Potri.008G033000 PTHR24012//PTHR24012:SF459 - FAMILY NOT NAMED // RNA-BINDING PROTEIN 4F Chr08 - View
Quercus lobata QL08p053633 8 - View
Rosa chinensis RcHm_v2.0_Chr1g0362301 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim03G0115000 chr03 - View
Salix brachista Sabra08G0021900 GWHAAZH00000008 - View
Salix brachista Sabra10G0177400 GWHAAZH00000010 + View
Sechium edule Sed0020000 LG06 + View
Sechium edule Sed0011758 LG01 - View
Sechium edule Sed0027411 LG03 - View
Solanum lycopersicum Solyc11g008210.3 glycine-rich RNA-binding protein RZ1C-like (AHRD V3.3 *-* A0A2I4DY40_9ROSI) SL4.0ch11 - View
Schrenkiella parvula Sp6g38470 K12885 - heterogeneous nuclear ribonucleoprotein G (RBMX, HNRNPG) ch6-6 - View
Solanum tuberosum PGSC0003DMG400031080 Glycine-rich RNA-binding protein ST4.03ch11 + View
Trochodendron aralioides TAR623G0946 group7 - View
Trochodendron aralioides TAR633G1384 group2 - View
Theobroma cacao Thecc.10G086400 RNA-binding family protein with retrovirus zinc finger-like domain Chromosome_10 + View
Tarenaya hassleriana THA.LOC104816430 glycine-rich RNA-binding protein RZ1C isoform X1 NW_010965775.1 + View
Tripterygium wilfordii TWI15G0746 NC_052247.1 - View
Tripterygium wilfordii TWI38G1352 NC_052252.1 - View
Vitis vinifera GSVIVG01016195001 chr13 - View