Gene: Sopen10g028750

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g028750
  • Transcript Identifier Sopen10g028750.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 76673133-76675277 : negative

Gene Family Information

  • ID HOM05D000268
  • #Genes/#Species 1624/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g028750.1

Descriptions

  • Description Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. | SU(VAR)3-9 homolog 1 (SUVH1) | CONTAINS InterPro DOMAIN/s: SRA-YDG , SET domain , Pre-SET zinc-binding sub-group , Post-SET domain , Pre-SET domain | BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034968
IEA
InterProhistone lysine methylation
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT2G24740
GO:0008361
ISO
PLAZA Integrative Orthologyregulation of cell size AT2G24740
GO:0040029
ISO
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT5G04940

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0018024
IEA
InterProhistone-lysine N-methyltransferase activity
GO:0005515
IEA
InterProprotein binding
GO:0031490
ISO
PLAZA Integrative Orthologychromatin DNA binding AT5G04940
GO:0010385
ISO
PLAZA Integrative Orthologydouble-stranded methylated DNA binding AT5G04940
GO:0042054
ISO
PLAZA Integrative Orthologyhistone methyltransferase activity AT5G04940
GO:0001228
ISO
PLAZA Integrative OrthologyDNA-binding transcription activator activity, RNA polymerase II-specific AT5G04940

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005694
ISO
PLAZA Integrative Orthologychromosome AT1G73100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007728 Pre-SET domain
IPR001214 SET domain
IPR003105 SRA-YDG
IPR015947 PUA-like superfamily
IPR036987 SRA-YDG superfamily
Mapman id Description
12.5.1.16.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.downstream SUVH-DNAJ methylation reader complex.methylated DNA binding component SUVH1/3