Gene: Sopen09g012390

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g012390
  • Transcript Identifier Sopen09g012390.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 22517962-22520239 : negative

Gene Family Information

  • ID HOM05D001008
  • #Genes/#Species 601/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g012390.1

Descriptions

  • Description Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance. | glyoxylate reductase 1 (GLYR1) | FUNCTIONS IN: 3-hydroxybutyrate dehydrogenase activity, phosphogluconate dehydrogenase (decarboxylating) activity | INVOLVED IN: response to oxidative stress | LOCATED IN: cytosol | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding , 6-phosphogluconate dehydrogenase, C-terminal-like , Dehydrogenase, multihelical , 3-hydroxyacid dehydrogenase/reductase , NAD(P)-binding domain , 3-hydroxyisobutyrate dehydrogenase-related, conserved site | BEST Arabidopsis thaliana protein match is: glyoxylate reductase 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT3G25530
GO:0009448
ISO
PLAZA Integrative Orthologygamma-aminobutyric acid metabolic process Solyc09g018790.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050661
IEA
InterProNADP binding
GO:0016491
IEA
InterProoxidoreductase activity
GO:0051287
IEA
InterProNAD binding
GO:0003858
ISO
PLAZA Integrative Orthology3-hydroxybutyrate dehydrogenase activity AT3G25530

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G25530

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily
IPR006115 6-phosphogluconate dehydrogenase, NADP-binding
IPR015815 3-hydroxyisobutyrate dehydrogenase-related
IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain
IPR036291 NAD(P)-binding domain superfamily
IPR013328 6-phosphogluconate dehydrogenase, domain 2
Mapman id Description
4.2.2.3.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-hydroxybutyrate formation.bifunctional gamma-hydroxybutyrate dehydrogenase and glyoxylate reductase