Gene: Sopen08g012000

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g012000
  • Transcript Identifier Sopen08g012000.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 30296720-30300336 : positive

Gene Family Information

  • ID HOM05D001212
  • #Genes/#Species 516/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g012000.1

Descriptions

  • Description A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia | KNOTTED1-like homeobox gene 3 (KNAT3) | FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity | INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 35 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ELK , KNOX1 , Homeobox , Homeodomain-like , KNOX2 , Homeodomain-related | BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009727
ISO
PLAZA Integrative Orthologydetection of ethylene stimulus AT4G32040
GO:0071369
ISO
PLAZA Integrative Orthologycellular response to ethylene stimulus AT4G32040
GO:0071345
ISO
PLAZA Integrative Orthologycellular response to cytokine stimulus AT5G25220
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT5G25220
GO:0009722
ISO
PLAZA Integrative Orthologydetection of cytokinin stimulus AT5G25220

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G25220

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G25220

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005539 ELK domain
IPR008422 Homeobox KN domain
IPR005540 KNOX1
IPR009057 Homeobox-like domain superfamily
IPR005541 KNOX2
IPR001356 Homeobox domain
Mapman id Description
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX)