Gene: AT5G25220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G25220
  • Transcript Identifier AT5G25220.1
  • Gene Type Coding gene
  • Location Chr5 : 8736208-8738115 : positive

Gene Family Information

  • ID HOM05D001212
  • #Genes/#Species 516/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G25220.1
  • symbol KNAT3
  • full_name KNOTTED1-like homeobox gene 3
  • uniprot P48000

Descriptions

  • Description homeobox protein knotted-1-like 3
  • Computational description KNOTTED1-like homeobox gene 3 (KNAT3); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 (TAIR:AT5G11060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009416
IEP
Gene Ontologyresponse to light stimulus1
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II2
GO:0071345
IDA
Gene Ontologycellular response to cytokine stimulus3
GO:0009722
IEP
Gene Ontologydetection of cytokinin stimulus4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific2
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding2
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus4
GO:0005634
IEA
InterPronucleus
GO:0005829
IDA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001356 Homeobox domain
IPR005540 KNOX1
IPR008422 Homeobox KN domain
IPR005539 ELK domain
IPR009057 Homeobox-like domain superfamily
IPR005541 KNOX2
Mapman id Description
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX)