Gene: Sopen06g023350

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g023350
  • Transcript Identifier Sopen06g023350.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 50788986-50793552 : positive

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g023350.1

Descriptions

  • Description a MADS box transcription factor expressed in the carpel and ovules | SEEDSTICK (STK) | FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development | LOCATED IN: nucleus | EXPRESSED IN: 11 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein ., Floral homeotic protein AGAMOUS (GAG2) - Panax ginseng (Korean ginseng)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048440
ISO
PLAZA Integrative Orthologycarpel development AT4G09960
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT4G09960
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT4G09960
GO:1903338
ISO
PLAZA Integrative Orthologyregulation of cell wall organization or biogenesis AT4G09960
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT4G09960
GO:0080155
ISO
PLAZA Integrative Orthologyregulation of double fertilization forming a zygote and endosperm AT4G09960
GO:0051302
ISO
PLAZA Integrative Orthologyregulation of cell division AT4G09960
GO:0080060
ISO
PLAZA Integrative Orthologyintegument development AT4G09960
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G09960
GO:0003677
IEA
InterProDNA binding
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0046983
IEA
InterProprotein dimerization activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090397
ISO
PLAZA Integrative Orthologystigma papilla AT4G09960
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002100 Transcription factor, MADS-box
IPR033896 MADS MEF2-like
IPR036879 Transcription factor, MADS-box superfamily
IPR002487 Transcription factor, K-box
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)