Gene: Sopen05g008830
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen05g008830
- Transcript Identifier Sopen05g008830.1
- Gene Type Coding gene
- Location Spenn-ch05 : 7845645-7865140 : negative
Gene Family Information
- ID HOM05D000002
- #Genes/#Species 26594/98
- Phylogenetic origin
- ID ORTHO05D000001
- #Genes/#Species 28434/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen05g008830.1
Descriptions
- Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), ABC transporter family protein | FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances | INVOLVED IN: transport, transmembrane transport | LOCATED IN: plasma membrane | EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower | EXPRESSED DURING: petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core , ABC transporter-like , ABC transporter, transmembrane domain, type 1 , ABC transporter integral membrane type 1 , ABC transporter, transmembrane domain , ABC transporter, conserved site | BEST Arabidopsis thaliana protein match is: P-glycoprotein 17
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015074 | IEA | InterPro | DNA integration | |
| GO:0055085 | IEA | InterPro | transmembrane transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0140359 | IEA | InterPro | ABC-type transporter activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016021 | IEA | InterPro | integral component of membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003439 | ABC transporter-like, ATP-binding domain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR039421 | Type 1 protein exporter |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036640 | ABC transporter type 1, transmembrane domain superfamily |
| IPR000477 | Reverse transcriptase domain |
| IPR003593 | AAA+ ATPase domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR005162 | Retrotransposon gag domain |
| IPR001584 | Integrase, catalytic core |
| IPR036397 | Ribonuclease H superfamily |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR041588 | Integrase zinc-binding domain |
| IPR011527 | ABC transporter type 1, transmembrane domain |
| IPR025724 | GAG-pre-integrase domain |
| Mapman id | Description |
|---|---|
| 24.1.3.1.1 | Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter |