Gene: Sopen04g002630
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g002630
- Transcript Identifier Sopen04g002630.1
- Gene Type Coding gene
- Location Spenn-ch04 : 1359133-1363256 : positive
Gene Family Information
- ID HOM05D000680
- #Genes/#Species 840/100
- Phylogenetic origin
- ID ORTHO05D000738
- #Genes/#Species 644/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen04g002630.1
Descriptions
- Description ATP synthase subunit beta, mitochondrial precursor (EC 3.6.3.14) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. | ATP synthase alpha/beta family protein | FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) RNA binding, copper ion binding | INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport, ATP biosynthetic process | LOCATED IN: mitochondrion, nucleolus, mitochondrial respiratory chain complex I, chloroplast envelope, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | EXPRESSED IN: 8 plant structures | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages | CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal , ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal , ATPase, F1 complex, beta subunit , ATP synthase, F1 beta subunit , ATPase, alpha/beta subunit, nucleotide-binding domain, active site , ATPase, F1/A1 complex, alpha/beta subunit, N-terminal , ATPase, AAA type, core , ATPase, alpha/beta subunit, nucleotide-binding domain | BEST Arabidopsis thaliana protein match is: ATP synthase alpha/beta family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | ATCG00480 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | ATCG00480 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT5G08680 |
| GO:0015986 | IEA | InterPro | ATP synthesis coupled proton transport | |
| GO:1902600 | IEA | InterPro | proton transmembrane transport | |
| GO:0046034 | IEA | InterPro | ATP metabolic process | |
| GO:0006754 | IEA | InterPro | ATP biosynthetic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008266 | ISO | PLAZA Integrative Orthology | poly(U) RNA binding | AT5G08690 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00480 |
| GO:0015078 | ISO | PLAZA Integrative Orthology | proton transmembrane transporter activity | ATCG00480 |
| GO:0008270 | ISO | PLAZA Integrative Orthology | zinc ion binding | ATCG00480 |
| GO:0046933 | IEA | InterPro | proton-transporting ATP synthase activity, rotational mechanism | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010287 | ISO | PLAZA Integrative Orthology | plastoglobule | ATCG00480 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G08690 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | ATCG00480 |
| GO:0010319 | ISO | PLAZA Integrative Orthology | stromule | ATCG00480 |
| GO:0031977 | ISO | PLAZA Integrative Orthology | thylakoid lumen | ATCG00480 |
| GO:0005747 | ISO | PLAZA Integrative Orthology | mitochondrial respiratory chain complex I | AT5G08690 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00480 |
| GO:0005753 | ISO | PLAZA Integrative Orthology | mitochondrial proton-transporting ATP synthase complex | AT5G08690 |
| GO:0009535 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid membrane | ATCG00480 |
| GO:0009579 | ISO | PLAZA Integrative Orthology | thylakoid | ATCG00480 |
| GO:0005754 | ISO | PLAZA Integrative Orthology | mitochondrial proton-transporting ATP synthase, catalytic core | ATCG00480 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G08690 |
| GO:0000275 | IEA | InterPro | mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) | |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G08690 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | ATCG00480 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG00480 |
| GO:0045261 | IEA | InterPro | proton-transporting ATP synthase complex, catalytic core F(1) |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR020971 | ATP synthase, F1 beta subunit |
| IPR042079 | ATP synthase, F1 beta subunit superfamily |
| IPR003593 | AAA+ ATPase domain |
| IPR004100 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain |
| IPR005722 | ATP synthase, F1 complex, beta subunit |
| IPR024034 | ATPase, F1/V1 complex, beta/alpha subunit, C-terminal |
| IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain |
| IPR036121 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 2.4.6.2.2 | Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit beta |