Gene: Sopen03g030870

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g030870
  • Transcript Identifier Sopen03g030870.3
  • Gene Type Coding gene
  • Location Spenn-ch03 : 66648710-66661113 : negative

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g030870.3

Descriptions

  • Description AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. | ARGONAUTE 4 (AGO4) | CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 , Stem cell self-renewal protein Piwi , Argonaute/Dicer protein, PAZ , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Argonaute family protein ., Stem cell self-renewal protein Piwi
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA Solyc03g111760.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036397 Ribonuclease H superfamily
IPR032474 Protein argonaute, N-terminal
IPR003165 Piwi domain
IPR036085 PAZ domain superfamily
IPR003100 PAZ domain
IPR032472 Argonaute linker 2 domain
IPR001680 WD40 repeat
IPR014811 Argonaute, linker 1 domain
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
12.5.1.13 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO)
19.3.3.3.3 Protein homeostasis.autophagy.phagophore expansion.ATG12-ATG5-ATG16 conjugation system.regulatory factor (ATG16)