Gene: AT2G38560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38560
  • Transcript Identifier AT2G38560.1
  • Gene Type Coding gene
  • Location Chr2 : 16134802-16136319 : positive

Gene Family Information

  • ID HOM05D002276
  • #Genes/#Species 296/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38560.1
  • symbol TFIIS
  • Alias RDO2,REDUCED DORMANCY 2
  • uniprot Q9ZVH8

Descriptions

  • Description transcript elongation factor IIS
  • Computational description transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006351
IBA
IEA
Gene Ontologytranscription, DNA-templated1
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006414
IEA
GOA Databasetranslational elongation
GO:0006412
IEA
GOA Databasetranslation
GO:0009845
IMP
Gene Ontologyseed germination2
GO:0009739
IMP
Gene Ontologyresponse to gibberellin2
GO:0034243
IMP
Gene Ontologyregulation of transcription elongation from RNA polymerase II promoter3
GO:0010162
IMP
Gene Ontologyseed dormancy process3
GO:0009910
IMP
Gene Ontologynegative regulation of flower development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003746
IEA
GOA Databasetranslation elongation factor activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 3
GO:0005634
IEA
InterPronucleus
GO:0005829
RCA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036575 Transcription elongation factor S-II, central domain superfamily
IPR006289 Transcription elongation factor, TFIIS
IPR001222 Zinc finger, TFIIS-type
IPR035441 TFIIS/LEDGF domain superfamily
IPR035100 Transcription elongation factor, IIS-type
IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR003618 Transcription elongation factor S-II, central domain
IPR017923 Transcription factor IIS, N-terminal
Mapman id Description
15.3.5.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.TFIIs transcription elongation factor