Gene: Sopen03g024620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g024620
  • Transcript Identifier Sopen03g024620.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 57381304-57398995 : negative

Gene Family Information

  • ID HOM05D000002
  • #Genes/#Species 26594/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g024620.1

Descriptions

  • Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain. | SU(VAR)3-9 homolog 6 (SUVH6) | FUNCTIONS IN: methyl-CpNpG binding, methyltransferase activity, methyl-CpG binding, methyl-CpNpN binding | INVOLVED IN: histone methylation | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: SET domain , SRA-YDG , Pre-SET zinc-binding sub-group , Pre-SET domain , Post-SET domain | BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034968
IEA
InterProhistone lysine methylation
GO:0015074
IEA
InterProDNA integration

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008270
IEA
InterProzinc ion binding
GO:0018024
IEA
InterProhistone-lysine N-methyltransferase activity
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001214 SET domain
IPR007728 Pre-SET domain
IPR001584 Integrase, catalytic core
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 DNA/RNA polymerase superfamily
IPR036397 Ribonuclease H superfamily
IPR012337 Ribonuclease H-like superfamily
IPR015947 PUA-like superfamily
IPR025724 GAG-pre-integrase domain
IPR003105 SRA-YDG
IPR036987 SRA-YDG superfamily
Mapman id Description
50.2.1 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group