Gene: Sopen03g004080
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g004080
- Transcript Identifier Sopen03g004080.1
- Gene Type Coding gene
- Location Spenn-ch03 : 2777554-2793433 : positive
Gene Family Information
- ID HOM05D000048
- #Genes/#Species 4563/100
- Phylogenetic origin
- ID ORTHO05D000001
- #Genes/#Species 28434/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen03g004080.1
Descriptions
- Description Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability. | detoxifying efflux carrier 35 (DTX35) | FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity | INVOLVED IN: anther dehiscence, flavonoid metabolic process, pollen development | LOCATED IN: membrane | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE | BEST Arabidopsis thaliana protein match is: MATE efflux family protein ., Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Reverse transcriptase, RNA-dependent DNA polymerase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990961 | IEA | InterPro | xenobiotic detoxification by transmembrane export across the plasma membrane | |
| GO:0055085 | IEA | InterPro | transmembrane transport | |
| GO:0015074 | IEA | InterPro | DNA integration |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042910 | IEA | InterPro | xenobiotic transmembrane transporter activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0015297 | IEA | InterPro | antiporter activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR025724 | GAG-pre-integrase domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
| IPR045069 | Multidrug and toxic compound extrusion family, eukaryotic |
| IPR036397 | Ribonuclease H superfamily |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR002528 | Multi antimicrobial extrusion protein |
| IPR001584 | Integrase, catalytic core |
| Mapman id | Description |
|---|---|
| 24.2.4.1.1 | Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX) |