Gene: Sopen02g020320
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g020320
- Transcript Identifier Sopen02g020320.2
- Gene Type Coding gene
- Location Spenn-ch02 : 44114160-44119010 : positive
Gene Family Information
- ID HOM05D001060
- #Genes/#Species 575/98
- Phylogenetic origin
- ID ORTHO05D000905
- #Genes/#Species 561/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen02g020320.2
Descriptions
- Description Phytochrome E - Ipomoea nil (Japanese morning glory) (Pharbitis nil), member of Histidine Kinase | phytochrome E (PHYE) | FUNCTIONS IN: protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity | INVOLVED IN: in 8 processes | LOCATED IN: membrane | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Phytochrome, central region , Signal transduction histidine kinase, core , PAS fold , PAS , Phytochrome chromophore attachment domain , ATPase-like, ATP-binding domain , PAS fold-2 , Phytochrome A/B/C/D/E , Phytochrome , Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain , Phytochrome chromophore binding site , GAF | BEST Arabidopsis thaliana protein match is: phytochrome B
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007165 | IEA | InterPro | signal transduction | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009584 | IEA | InterPro | detection of visible light | |
| GO:0009585 | IEA | InterPro | red, far-red light phototransduction | |
| GO:0017006 | IEA | InterPro | protein-tetrapyrrole linkage | |
| GO:0018298 | IEA | InterPro | protein-chromophore linkage | |
| GO:0009903 | ISO | PLAZA Integrative Orthology | chloroplast avoidance movement | Pp3c25_2610 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000155 | IEA | InterPro | phosphorelay sensor kinase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0009881 | IEA | InterPro | photoreceptor activity | |
| GO:0042803 | IEA | InterPro | protein homodimerization activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | Pp3c25_2610 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR035965 | PAS domain superfamily |
| IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| IPR044767 | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain |
| IPR000014 | PAS domain |
| IPR013654 | PAS fold-2 |
| IPR001294 | Phytochrome |
| IPR029016 | GAF-like domain superfamily |
| IPR043150 | Phytochrome, PHY domain |
| IPR003018 | GAF domain |
| IPR012129 | Phytochrome A/B/C/D/E |
| IPR013767 | PAS fold |
| IPR003594 | Histidine kinase/HSP90-like ATPase |
| IPR013515 | Phytochrome, central region |