Gene: Sopen01g028970
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g028970
- Transcript Identifier Sopen01g028970.1
- Gene Type Coding gene
- Location Spenn-ch01 : 85484234-85495275 : positive
Gene Family Information
- ID HOM05D000002
- #Genes/#Species 26594/98
- Phylogenetic origin
- ID ORTHO05D000001
- #Genes/#Species 28434/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen01g028970.1
Descriptions
- Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a cysteine-rich receptor-like protein kinase. | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8) | FUNCTIONS IN: kinase activity | INVOLVED IN: protein amino acid phosphorylation | CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site , Reverse transcriptase, RNA-dependent DNA polymerase , Serine/threonine-protein kinase domain , Protein of unknown function DUF26 , Serine/threonine-protein kinase-like domain , Serine/threonine-protein kinase, active site , Protein kinase-like domain , Protein kinase, catalytic domain , Tyrosine-protein kinase, catalytic domain | BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006511 | IEA | InterPro | ubiquitin-dependent protein catabolic process | |
| GO:0015074 | IEA | InterPro | DNA integration |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0031625 | IEA | InterPro | ubiquitin protein ligase binding | |
| GO:0043531 | IEA | InterPro | ADP binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR025724 | GAG-pre-integrase domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR036317 | Cullin homology domain superfamily |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR001373 | Cullin, N-terminal |
| IPR001584 | Integrase, catalytic core |
| IPR042197 | Apoptotic protease-activating factors, helical domain |
| IPR002182 | NB-ARC |
| IPR016158 | Cullin homology domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR036397 | Ribonuclease H superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |