Gene: Solyc10g005490.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc10g005490.4
- Transcript Identifier Solyc10g005490.4.1
- Gene Type Coding gene
- Location SL4.0ch10 : 283367-301676 : negative
Gene Family Information
- ID HOM05D003169
- #Genes/#Species 215/96
- Phylogenetic origin
- ID ORTHO05D003700
- #Genes/#Species 209/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc10g005490.4.1
- uniprot A0A3Q7IAQ6
- gene_id Solyc10g005490
Descriptions
- Description Protein strawberry notch (AHRD V3.3 *** A0A2G3BCB2_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IBA IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0010286 | ISO | PLAZA Integrative Orthology | heat acclimation | AT1G79350 |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT1G79350 |
| GO:1900036 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to heat | AT1G79350 |
| GO:0016584 | ISO | PLAZA Integrative Orthology | nucleosome positioning | AT1G79350 |
| GO:0006334 | ISO | PLAZA Integrative Orthology | nucleosome assembly | AT1G79350 |
| GO:0040029 | ISO | PLAZA Integrative Orthology | regulation of gene expression, epigenetic | AT1G79350 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0042393 | IBA | GOA Database | histone binding | |
| GO:0031490 | IBA | GOA Database | chromatin DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G79350 |
| GO:1990841 | ISO | PLAZA Integrative Orthology | promoter-specific chromatin binding | AT1G79350 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G79350 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR019787 | Zinc finger, PHD-finger |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001965 | Zinc finger, PHD-type |
| IPR026741 | Protein strawberry notch |
| IPR039187 | Strawberry notch, AAA domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |