Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 0.0e+00 1536.2 766 100.0
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 0.0e+00 1514.6 762 98.8
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 0.0e+00 1371.7 754 91.5
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 0.0e+00 1287.7 769 84.1
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 0.0e+00 1270.8 766 82.4
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 0.0e+00 1236.1 771 79.8
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1235.7 767 79.9
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1233.4 771 79.4
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 0.0e+00 1221.1 765 79.0
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 0.0e+00 1219.1 767 79.3
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 0.0e+00 1213.4 763 79.0
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 0.0e+00 1212.6 809 76.4
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 0.0e+00 1211.8 765 78.6
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 0.0e+00 1209.1 770 78.7
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 0.0e+00 1207.2 774 77.8
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 0.0e+00 1207.2 772 78.2
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1204.1 771 77.8
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 0.0e+00 1203.3 769 78.7
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 0.0e+00 1203.0 735 80.1
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1202.2 771 77.7
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 0.0e+00 1200.3 765 78.8
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 0.0e+00 1197.6 771 77.4
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 0.0e+00 1196.0 772 78.2
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1194.5 785 75.7
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1193.3 795 76.4
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 0.0e+00 1192.9 763 77.1
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1191.0 753 77.8
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 0.0e+00 1191.0 813 75.0
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1189.5 765 77.5
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 0.0e+00 1185.2 766 76.4
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1184.1 778 76.0
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 0.0e+00 1180.2 775 75.6
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1179.9 772 75.5
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1179.9 783 75.1
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1179.9 781 75.3
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1179.1 760 78.4
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 0.0e+00 1178.7 807 75.0
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1178.3 786 74.4
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 0.0e+00 1178.3 771 75.7
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 0.0e+00 1177.5 792 75.3
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1176.0 769 75.7
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 0.0e+00 1175.6 854 70.5
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1171.4 773 75.5
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 0.0e+00 1169.5 782 75.3
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 0.0e+00 1161.7 791 73.8
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1161.0 771 74.3
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1161.0 784 75.1
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 0.0e+00 1160.6 766 75.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 0.0e+00 1158.3 770 74.9
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 0.0e+00 1157.9 780 75.4
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 0.0e+00 1156.4 767 75.5
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 0.0e+00 1155.2 778 76.0
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1152.9 760 75.3
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 0.0e+00 1151.3 780 74.0
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 0.0e+00 1147.9 752 76.1
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1146.7 786 73.8
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 0.0e+00 1142.1 786 72.3
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 0.0e+00 1137.9 753 74.1
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 0.0e+00 1137.5 756 76.3
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 0.0e+00 1134.4 736 76.4
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 0.0e+00 1132.9 792 73.2
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 0.0e+00 1132.9 735 76.9
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 0.0e+00 1130.2 785 72.5
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 0.0e+00 1127.9 798 72.9
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 0.0e+00 1127.5 746 75.1
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 0.0e+00 1126.7 790 73.2
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1126.3 797 72.1
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1123.2 778 73.0
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1121.7 774 73.6
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1119.4 778 72.9
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 0.0e+00 1117.8 799 72.3
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 0.0e+00 1117.8 799 71.6
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 0.0e+00 1115.9 791 72.3
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 0.0e+00 1108.2 804 70.9
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 0.0e+00 1107.8 808 70.2
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 0.0e+00 1107.4 812 70.9
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 0.0e+00 1102.4 872 64.8
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 0.0e+00 1102.4 752 73.1
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 0.0e+00 1095.9 826 69.1
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1092.8 756 73.0
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 0.0e+00 1082.4 737 74.5
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 0.0e+00 1080.1 766 72.2
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 5.2e-312 1073.5 799 69.3
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.4e-310 1069.3 846 66.2
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 2.0e-309 1065.4 738 71.7
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 5.5e-304 1047.3 678 77.4
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 5.7e-301 1037.3 716 73.0
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 6.8e-294 1013.8 648 77.3
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 2.6e-293 1011.9 675 77.5
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 1.6e-290 1002.7 811 62.9
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 2.8e-287 991.9 792 63.9
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 1.4e-278 963.0 754 65.1
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 1.9e-272 942.6 752 64.6
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 9.5e-272 940.3 744 64.9
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 7.6e-269 930.6 766 63.2
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 8.4e-268 927.2 806 60.7
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 1.1e-267 926.8 568 81.9
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 2.0e-261 906.0 750 62.7
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 2.9e-260 902.1 754 61.3
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.4e-259 899.8 750 61.9
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.4e-259 899.0 505 88.3
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 1.2e-258 896.7 817 57.8
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 2.7e-258 895.6 746 62.1
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 6.0e-258 894.4 792 58.7
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.7e-257 892.9 672 69.2
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 3.3e-256 888.6 782 60.5
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 7.6e-253 877.5 755 60.5
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 1.7e-252 876.3 761 59.8
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 2.7e-250 869.0 765 59.6
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 7.9e-250 867.5 497 85.5
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 6.2e-247 857.8 691 64.8
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 1.1e-246 857.1 692 65.0
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 2.2e-236 822.8 732 59.7
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 3.8e-236 822.0 817 52.8
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 8.7e-233 810.8 614 66.9
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.6e-226 788.9 580 70.2
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 1.1e-216 757.3 518 73.9
Lj2A8G63 Lonicera japonica HOM05D003169 ORTHO05D003700 3.4e-192 676.0 470 74.0
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 4.4e-184 649.0 527 64.3
Oeu005061.1 Olea europaea HOM05D003169 ORTHO05D003700 8.6e-172 608.2 367 81.2
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 3.2e-166 589.7 359 80.5
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.2e-166 589.7 354 83.6
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 4.1e-166 589.3 651 52.8
MBI18_g42879_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 4.1e-166 589.3 386 77.2
Medtr6g091930 Medicago truncatula HOM05D003169 ORTHO05D003700 6.0e-141 505.8 415 62.4
HanXRQChr13g0408921 Helianthus annuus HOM05D003169 ORTHO05D003700 2.5e-139 500.4 371 66.6
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 2.3e-124 450.7 458 49.1
Nitab4.5_0007774g0010 Nicotiana tabacum HOM05D003169 ORTHO05D003700 8.7e-124 448.7 277 83.4
Oeu025996.1 Olea europaea HOM05D003169 ORTHO05D003700 2.4e-121 440.7 352 64.8
Nitab4.5_0003291g0050 Nicotiana tabacum HOM05D003169 ORTHO05D003700 9.0e-121 438.7 280 82.9
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 5.5e-118 429.5 475 53.3
CiPaw.15G112000 Carya illinoinensis HOM05D003169 ORTHO05D003700 3.0e-116 423.7 279 74.9
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 4.3e-115 419.9 312 69.2
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.4e-113 414.8 328 64.3
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 9.7e-107 392.1 334 63.2
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 2.6e-99 367.5 430 46.7
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 5.9e-96 356.3 351 55.6
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 8.5e-95 352.4 468 41.9
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.1e-93 347.8 272 66.9
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 9.7e-91 339.0 633 37.4
Os08g0223700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.6e-88 331.6 315 56.5
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 1.3e-82 312.0 195 79.0
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 1.3e-82 312.0 310 54.8
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.1e-81 307.4 518 37.8
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.0e-80 304.7 554 36.5
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 2.7e-80 304.3 573 36.1
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.6e-77 293.9 486 37.9
PGSC0003DMG400011248 Solanum tuberosum HOM05D003169 ORTHO05D003700 7.5e-75 286.2 149 94.0
SEGI_39235 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.8e-73 281.6 168 81.0
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 5.9e-72 276.6 287 52.3
Nn7g38412 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.5e-70 271.9 180 78.3
Cpa.g.sc32.155 Carica papaya HOM05D003169 ORTHO05D003700 2.2e-58 231.5 125 88.8
MD07G1097900 Malus domestica HOM05D003169 ORTHO05D003700 1.4e-57 228.8 161 72.7
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 2.0e-56 224.9 155 72.9
TPR.G3613 Trifolium pratense HOM05D003169 ORTHO05D003700 3.6e-53 214.2 207 56.5
Cpa.g.sc32.156 Carica papaya HOM05D003169 ORTHO05D003700 1.5e-43 182.2 128 70.3
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 1.9e-41 175.3 119 68.9
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 1.8e-36 158.7 175 50.3
SGA_v2.0_scaffold4G01863 Striga asiatica HOM05D003169 ORTHO05D003700 2.4e-36 158.3 115 68.7
Thhalv10000387m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 9.9e-35 152.9 87 81.6
VMungo1127G0791 Vigna mungo HOM05D003169 ORTHO05D003700 8.4e-34 149.8 140 57.1
Nitab4.5_0020695g0020 Nicotiana tabacum HOM05D003169 ORTHO05D036887 4.3e-30 137.5 131 58.0
Hund12039 Selenicereus undatus HOM05D003169 ORTHO05D003700 2.4e-28 131.7 118 51.7
arahy.Tifrunner.gnm1.ann1.2P0S20 Arachis hypogaea HOM05D003169 ORTHO05D003700 6.9e-28 130.2 78 78.2
TPR.G373 Trifolium pratense HOM05D003169 ORTHO05D003700 8.4e-26 123.2 122 52.5
RhsimUnG0048600 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.0e-23 116.3 198 40.9
MELO3C035414.2 Cucumis melo HOM05D003169 ORTHO05D003700 2.8e-21 108.2 76 57.9
Nitab4.5_0007774g0090 Nicotiana tabacum HOM05D003169 ORTHO05D036887 6.9e-20 103.6 108 55.6
QL04p095737 Quercus lobata HOM05D003169 ORTHO05D003700 4.5e-19 100.9 137 44.5
TPR.G36388 Trifolium pratense HOM05D003169 ORTHO05D036887 5.8e-19 100.5 121 43.0
Actinidia33342 Actinidia chinensis HOM05D003169 ORTHO05D003700 2.2e-18 98.6 50 96.0
Actinidia33341 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.4e-17 95.9 135 44.4
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 5.4e-17 94.0 107 44.9
Os04g0610200 Oryza sativa ssp. japonica HOM05D034463 ORTHO05D036998 2.5e-14 85.1 140 38.6
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 1.6e-13 82.4 87 55.2
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 4.9e-10 70.9 33 90.9
Cre02.g095052 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.8e-07 62.4 63 50.8
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.3e-07 62.0 115 39.1
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 3.9e-07 61.2 64 50.0


User provided reference genes

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