Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Aethionema arabicum | Aa31LG10G320 | LG-10 | - | View | |
| Acer truncatum | Atru.chr2.3696 | chr2 | - | View | |
| Actinidia chinensis | Actinidia30396 | Lachesis_group10 | - | View | |
| Actinidia chinensis | Actinidia04999 | Lachesis_group19 | + | View | |
| Arabidopsis lyrata | AL1G64000 | scaffold_1 | + | View | |
| Avicennia marina | MSTRG.13022 | ScioBoG_17730_HRSCAF_17811 | - | View | |
| Avicennia marina | MSTRG.15797 | ScioBoG_19538_HRSCAF_19626 | - | View | |
| Amaranthus hybridus | Ah.06g181460 | Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate-specific ribonuclease) (AtPARN) (Protein ABA hypersensitive germination 2) | AmaHy_arrow1_Scaffold_6 | - | View |
| Amaranthus hybridus | Ah.04g166610 | Probable ribosomal RNA small subunit methyltransferase B (EC 2.1.1.176) (16S rRNA m5C967 methyltransferase) (rRNA (cytosine-C(5)-)-methyltransferase RsmB) | AmaHy_arrow1_Scaffold_4 | - | View |
| Aquilegia oxysepala | Aqoxy1G04266 | CHR01 | - | View | |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.IH99E4 | K01148 - poly(A)-specific ribonuclease (PARN) | arahy.Tifrunner.gnm1.Arahy.01 | - | View |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.I0JGGQ | K01148 - poly(A)-specific ribonuclease (PARN) | arahy.Tifrunner.gnm1.Arahy.11 | + | View |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.AFR4D1 | PF01029//PF01189 - NusB family (NusB) // 16S rRNA methyltransferase RsmF (Nol1_Nop2_Fmu) | arahy.Tifrunner.gnm1.Arahy.07 | + | View |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.HGG2PG | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | arahy.Tifrunner.gnm1.Arahy.17 | + | View |
| Arabidopsis thaliana | AT1G55870 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein Encodes a poly(A)-specific ribonuclease%2C AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. ABA-HYPERSENSITIVE GERMINATION 2 (AHG2)%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: response to abscisic acid stimulus%2C RNA modification%2C response to stress%2C response to salicylic acid stimulus%3B LOCATED IN: nucleus%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT3G25430.1)%3B Has 452 Blast hits to 437 proteins in 136 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 226%3B Fungi - 62%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 90 (source: NCBI BLink). | Chr1 | + | View |
| Beta vulgaris | EL10Ac4g07557 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Chr4_EL10_PGA_scaffold1 | + | View |
| Camellia sinensis var. sinensis | CSS0036592 | hypothetical protein CICLE_v10010260mg [Citrus clementina] | Chr7 | + | View |
| Camellia sinensis var. sinensis | CSS0011372 | PREDICTED: poly(A)-specific ribonuclease PARN [Vitis vinifera] | Chr5 | + | View |
| Capsicum annuum | CAN.G623.15 | PGAv.1.6.scaffold623 | - | View | |
| Cannabis sativa | CANSAT11G0717 | NC_044377.1 | + | View | |
| Cicer arietinum L. | Ca_06399_v3 | Ca_LG2_v3 | - | View | |
| Corylus avellana | Haze_09831 | Similar to NOP2A: 25S rRNA (cytosine-C(5))-methyltransferase NOP2A (Arabidopsis thaliana OX%3D3702) | 4 | - | View |
| Coffea canephora | Cc05_g14990 | Poly(A)-specific ribonuclease PARN | chr5 | - | View |
| Citrus clementina | Ciclev10007611m.g | scaffold_1 | - | View | |
| Carpinus fangiana | Cfa020185 | Cfa08 | + | View | |
| Cardamine hirsuta | CARHR045570 | Poly(A)-specific ribonuclease PARN | Chr1 | + | View |
| Carya illinoinensis | CiPaw.12G138600 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Chr12 | - | View |
| Citrullus lanatus | ClCG10G004430 | Poly(A)-specific ribonuclease PARN | CG_Chr10 | + | View |
| Cucumis melo | MELO3C014116.2 | poly(A)-specific ribonuclease PARN | chr06 | + | View |
| Corchorus olitorius | COL.COLO4_09841 | Ribonuclease CAF1 | AWUE01014274.1 | - | View |
| Carica papaya | Cpa.g.sc12.117 | supercontig_12 | - | View | |
| Chenopodium quinoa | AUR62036464 | PARN: Poly(A)-specific ribonuclease PARN | C_Quinoa_Scaffold_2080 | - | View |
| Chenopodium quinoa | AUR62017111 | PARN: Poly(A)-specific ribonuclease PARN | C_Quinoa_Scaffold_3787 | - | View |
| Capsella rubella | Carub.0001s4445 | PTHR15092//PTHR15092:SF22 - POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 // TARGET OF EGR1 PROTEIN 1 | scaffold_1 | + | View |
| Cucumis sativus L. | CsaV3_3G004220 | poly(A)-specific ribonuclease PARN | chr3 | + | View |
| Daucus carota | DCAR_017078 | hypothetical protein | DCARv2_Chr5 | + | View |
| Davidia involucrata | Dinv10340 | GWHABJS00000001 | - | View | |
| Durio zibethinus | Duzib268G0190 | NW_019168270.1 | + | View | |
| Erigeron canadensis | ECA236G0853 | Conyza_canadensis_scaffold:3 | - | View | |
| Eucalyptus grandis | Eucgr.F02044 | Chr06 | + | View | |
| Eucalyptus grandis | Eucgr.F03687 | Chr06 | + | View | |
| Erythranthe guttata | Migut.M01648 | scaffold_13 | + | View | |
| Erythranthe guttata | Migut.H01753 | scaffold_8 | + | View | |
| Eutrema salsugineum | Thhalv10020504m.g | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | scaffold_13 | + | View |
| Eutrema salsugineum | Thhalv10011283m.g | PTHR15092:SF22 - TARGET OF EGR1 PROTEIN 1 | scaffold_7 | - | View |
| Fragaria x ananassa | FAN16G2293 | 2.1.1.176 - 16S rRNA (cytosine(967)-C(5))-methyltransferase | Fvb3-3 | + | View |
| Fragaria x ananassa | FAN21G0812 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Fvb3-2 | + | View |
| Fragaria x ananassa | FAN25G1954 | K01148 - poly(A)-specific ribonuclease (PARN) | Fvb3-1 | - | View |
| Fragaria vesca | FvH4_3g42960 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Fvb3 | + | View |
| Gossypium hirsutum | Gohir.A01G091900 | K01148 - poly(A)-specific ribonuclease (PARN) | A01 | - | View |
| Gossypium hirsutum | Gohir.D01G062100 | K01148 - poly(A)-specific ribonuclease (PARN) | D01 | - | View |
| Glycine max | Glyma.08G330300 | K01148 - poly(A)-specific ribonuclease (PARN) | Gm08 | - | View |
| Glycine max | Glyma.02G301000 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Gm02 | - | View |
| Glycine max | Glyma.14G013102 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Gm14 | + | View |
| Glycine max | Glyma.18G076100 | K01148 - poly(A)-specific ribonuclease (PARN) | Gm18 | + | View |
| Gossypium raimondii | Gorai.002G100700 | Chr02 | - | View | |
| Lupinus albus | Lalb_Chr15g0082171 | PTHR15092:SF22 - TARGET OF EGR1 PROTEIN 1 | Lalb_Chr15 | - | View |
| Lupinus albus | Lalb_Chr10g0107431 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Lalb_Chr10 | - | View |
| Lotus japonicus | Lj6g0025052 | PTHR15092:SF22 - TARGET OF EGR1 PROTEIN 1 | chr6 | + | View |
| Lotus japonicus | LjContig00081g0019548 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Contig00081 | + | View |
| Lonicera japonica | Lj8C179G13 | GWHAAZE00000008 | - | View | |
| Lonicera japonica | Lj1A891G67 | GWHAAZE00000001 | - | View | |
| Lactuca sativa | Lsat_1_v5_gn_7_114340 | Lsat_1_v8_lg_7 | - | View | |
| Magnolia biondii | MBI14_g25881_MAGBIO | AED:0.25 | Chr14 | - | View |
| Malus domestica | MD11G1030900 | Polynucleotidyl transferase | Chr11 | - | View |
| Malus domestica | MD03G1026800 | Polynucleotidyl transferase | Chr03 | - | View |
| Manihot esculenta | Manes.03G141900 | Chromosome03 | - | View | |
| Manihot esculenta | Manes.15G059300 | Chromosome15 | + | View | |
| Medicago truncatula | Medtr5g096020 | ribosomal RNA small subunit methyltransferase B | chr5 | - | View |
| Nicotiana tabacum | Nitab4.5_0000163g0170 | NusB/RsmB/TIM44, RNA (C5-cytosine) methyltransferase, putative Rsm-related, plant, RNA (C5-cytosine) methyltransferase, Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p | Nitab4.5_0000163 | + | View |
| Nicotiana tabacum | Nitab4.5_0002736g0010 | Ribonuclease CAF1, Ribonuclease H-like domain | Nitab4.5_0002736 | + | View |
| Olea europaea | Oeu049406.1 | chr6 | + | View | |
| Petunia axillaris | Peaxi162Scf00006g00319 | Ribosomal RNA small subunit methyltransferase B | Peaxi162Scf00006 | - | View |
| Petunia axillaris | Peaxi162Scf00139g01315 | Poly(A)-specific ribonuclease PARN | Peaxi162Scf00139 | + | View |
| Punica granatum | PGR083G1098 | NC_045133.1 | + | View | |
| Punica granatum | PGR031G2084 | NC_045127.1 | + | View | |
| Prunus persica | Prupe.6G024200 | Pp06 | - | View | |
| Pisum sativum | Psat2g007080 | 16S rRNA methyltransferase RsmB/F | chr2LG1 | + | View |
| Pisum sativum | Psat5g167400 | CAF1 family ribonuclease | chr5LG3 | + | View |
| Papaver somniferum | PSO675G5997 | NC_039358.1 | + | View | |
| Populus trichocarpa | Potri.001G368401 | PTHR15092//PTHR15092:SF22 - POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 // TARGET OF EGR1 PROTEIN 1 | Chr01 | - | View |
| Phaseolus vulgaris | Phvul.008G279400 | K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) | Chr08 | - | View |
| Phaseolus vulgaris | Phvul.006G058000 | Chr06 | - | View | |
| Quercus lobata | QL08p003952 | 8 | + | View | |
| Rhododendron simsii | Rhsim06G0230400 | chr06 | - | View | |
| Striga asiatica | SGA_v2.0_scaffold8G04414 | scaffold8 | - | View | |
| Striga asiatica | SGA_v2.0_scaffold168G38565 | scaffold168 | - | View | |
| Salvia bowleyana | SalBow8G2422 | GWHASIU00000004 | + | View | |
| Salix brachista | Sabra16G0241500 | GWHAAZH00000016 | - | View | |
| Simmondsia chinensis | Sc03g0011370 | GWHAASQ00000003 | - | View | |
| Simmondsia chinensis | Sc16g0008120 | GWHAASQ00000016 | - | View | |
| Sechium edule | Sed0006389 | LG03 | - | View | |
| Solanum pennellii | Sopen07g033830 | Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. | ABA-HYPERSENSITIVE GERMINATION 2 (AHG2) | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus | LOCATED IN: nucleus | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | Spenn-ch07 | - | View |
| Solanum pennellii | Sopen12g007630 | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | FUNCTIONS IN: RNA binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: chloroplast | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p , NusB/RsmB/TIM44 | BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | Spenn-ch12 | - | View |
| Solanum tuberosum | PGSC0003DMG400022169 | Poly(A)-specific ribonuclease PARN | ST4.03ch07 | - | View |
| Solanum tuberosum | PGSC0003DMG402029795 | Ribosomal RNA small subunit methyltransferase B | ST4.03ch12 | - | View |
| Selenicereus undatus | Hund01886 | Scaffold_33678 | + | View | |
| Trochodendron aralioides | TAR629G2623 | group0 | + | View | |
| Theobroma cacao | Thecc.07G012400 | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | Chromosome_7 | + | View |
| Tarenaya hassleriana | THA.LOC104815694 | uncharacterized protein LOC104815694 | NW_010965696.1 | + | View |
| Tarenaya hassleriana | THA.LOC104822731 | poly(A)-specific ribonuclease PARN isoform X1 | NW_010966725.1 | + | View |
| Trifolium pratense | TPR.G24133 | Tp57577_TGAC_v2_LG4 | - | View | |
| Trifolium pratense | TPR.G8601 | Tp57577_TGAC_v2_LG4 | + | View | |
| Tripterygium wilfordii | TWI39G0509 | NC_052250.1 | + | View | |
| Vaccinium macrocarpon | vmacro11596 | Similar to rsmB: Probable ribosomal RNA small subunit methyltransferase B (Bacillus subtilis (strain 168) OX%3D224308) | chr11_Vaccinium_macrocarpon_Stevens_v1 | + | View |
| Vigna mungo | VMungo0647G0703 | CM024073.1 | - | View | |
| Vigna mungo | VMungo0540G2248 | CM024075.1 | + | View | |
| Vitis vinifera | GSVIVG01014694001 | chr19 | - | View | |
| Zea mays | Zm00001eb424550 | Zm00001e041044 Poly(A)-specific ribonuclease PARN | 10 | - | View |