Gene: Solyc07g062780.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g062780.3
  • Transcript Identifier Solyc07g062780.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 65300950-65304066 : negative

Gene Family Information

  • ID HOM05D006561
  • #Genes/#Species 122/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g062780.3.1
  • uniprot A0A3Q7HEK2
  • gene_id Solyc07g062780

Descriptions

  • Description E3 SUMO-protein ligase MMS21 (AHRD V3.3 *** A0A2G2Z5F2_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045931
ISO
PLAZA Integrative Orthologypositive regulation of mitotic cell cycle AT3G15150
GO:0032876
ISO
PLAZA Integrative Orthologynegative regulation of DNA endoreduplication AT3G15150
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT3G15150
GO:0080038
ISO
PLAZA Integrative Orthologypositive regulation of cytokinin-activated signaling pathway AT3G15150
GO:0008284
ISO
PLAZA Integrative Orthologypositive regulation of cell population proliferation AT3G15150
GO:0060250
ISO
PLAZA Integrative Orthologygerm-line stem-cell niche homeostasis AT3G15150
GO:0010082
ISO
PLAZA Integrative Orthologyregulation of root meristem growth AT3G15150
GO:0048509
ISO
PLAZA Integrative Orthologyregulation of meristem development AT3G15150
GO:0016925
IBA
IEA
GOA Databaseprotein sumoylation
GO:0000724
IBA
IEA
GOA Databasedouble-strand break repair via homologous recombination
GO:0000724
IEA
InterProdouble-strand break repair via homologous recombination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G15150
GO:0061665
IBA
GOA DatabaseSUMO ligase activity
GO:0019789
IEA
GOA DatabaseSUMO transferase activity
GO:0019789
IEA
InterProSUMO transferase activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030915
IBA
IEA
GOA DatabaseSmc5-Smc6 complex
GO:0030915
IEA
InterProSmc5-Smc6 complex
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR026846 E3 SUMO-protein ligase Nse2 (Mms21)
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR004181 Zinc finger, MIZ-type
Mapman id Description
14.3.6.1.3 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE2-SMC5-SMC6 subcomplex.SUMO-ligase component HYP2/NSE2
19.2.2.2.4.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.SUMO conjugation (sumoylation).SUMO E3 ligase activities.E3 ligase (HPY2/NSE2)