Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 6.5e-140 500.7 256 100.0
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 1.6e-138 496.1 255 98.8
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 3.7e-135 485.0 255 97.3
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 5.7e-120 434.5 253 86.2
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 2.2e-119 432.6 253 86.2
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 2.2e-103 379.4 253 78.3
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 5.3e-102 374.8 214 86.0
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 7.0e-94 347.8 253 68.4
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 9.5e-91 337.4 253 66.8
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 1.2e-90 337.0 253 66.4
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.8e-90 335.9 239 66.9
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 3.1e-86 322.4 253 62.8
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 2.7e-85 319.3 253 63.6
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 1.7e-84 316.6 253 61.3
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 6.6e-84 314.7 257 63.0
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 1.9e-83 313.2 256 61.7
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 9.5e-83 310.8 253 61.3
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 9.5e-83 310.8 253 61.3
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 6.1e-82 308.1 249 63.1
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.8e-81 306.6 253 59.7
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 2.2e-79 299.7 253 58.1
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 8.3e-79 297.7 255 58.4
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.4e-78 297.0 254 59.1
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 2.4e-78 296.2 252 57.9
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 5.4e-78 295.0 221 64.7
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 2.7e-77 292.7 258 57.8
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 1.0e-76 290.8 249 59.4
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 1.1e-75 287.3 255 56.9
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 1.5e-75 287.0 255 58.4
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 1.9e-75 286.6 252 56.7
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 7.3e-75 284.6 259 56.4
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 1.6e-74 283.5 323 47.7
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 2.1e-74 283.1 241 56.8
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 2.1e-74 283.1 253 56.1
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 2.8e-74 282.7 250 57.6
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 3.6e-74 282.3 252 56.3
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 1.1e-73 280.8 253 56.5
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 1.8e-73 280.0 256 55.9
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 3.1e-73 279.3 256 54.3
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 3.1e-73 279.3 250 58.8
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 5.2e-73 278.5 252 56.3
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 6.8e-73 278.1 254 56.7
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 8.9e-73 277.7 247 56.7
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 2.0e-72 276.6 249 56.2
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 2.0e-72 276.6 274 51.1
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 2.6e-72 276.2 257 56.4
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 3.4e-72 275.8 260 54.6
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 9.8e-72 274.2 255 52.5
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 9.8e-72 274.2 255 52.5
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 2.2e-71 273.1 255 55.3
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 2.2e-71 273.1 256 56.2
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 6.4e-71 271.6 255 52.2
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 6.4e-71 271.6 249 54.2
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 1.1e-70 270.8 206 66.0
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.4e-70 270.4 256 55.9
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 1.9e-70 270.0 253 53.8
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 2.4e-70 269.6 249 52.6
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 3.2e-70 269.2 254 52.0
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.2e-70 269.2 256 55.9
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 4.1e-70 268.9 260 52.7
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 7.0e-70 268.1 249 52.2
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 2.1e-69 266.5 249 52.2
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 2.1e-69 266.5 249 52.2
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 2.7e-69 266.2 249 53.8
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 2.7e-69 266.2 216 58.8
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 3.5e-69 265.8 256 54.3
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 1.0e-68 264.2 255 52.5
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.0e-68 264.2 254 51.2
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 1.3e-68 263.8 251 52.6
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 2.3e-68 263.1 259 49.8
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 6.6e-68 261.5 256 50.8
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.5e-67 260.4 249 53.8
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 1.5e-67 260.4 251 53.8
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 1.5e-67 260.4 252 54.4
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 4.3e-67 258.8 253 53.8
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 1.2e-66 257.3 250 53.2
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 4.0e-65 252.3 237 53.6
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 6.8e-65 251.5 252 51.2
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 1.2e-64 250.8 250 51.6
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 2.6e-64 249.6 212 57.1
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 3.4e-64 249.2 252 50.4
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 1.7e-63 246.9 252 48.8
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 2.2e-63 246.5 254 52.4
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 1.9e-62 243.4 251 51.4
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 4.1e-62 242.3 252 48.8
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 1.6e-61 240.4 233 51.1
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 6.0e-61 238.4 248 48.4
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 6.0e-61 238.4 248 48.4
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 6.0e-61 238.4 207 58.9
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 7.8e-61 238.0 231 51.9
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 2.0e-56 223.4 300 45.3
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 5.8e-56 221.9 223 52.9
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 2.4e-54 216.5 253 47.8
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 3.9e-52 209.1 176 58.5
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 5.1e-52 208.8 207 49.8
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 3.6e-50 202.6 230 47.4
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 1.6e-45 187.2 182 54.4
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 1.7e-44 183.7 125 68.0
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 8.7e-44 181.4 185 49.7
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 2.1e-42 176.8 120 67.5
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 7.6e-40 168.3 251 36.7
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 6.7e-36 155.2 283 31.4
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 2.1e-34 150.2 565 25.7
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.8e-33 147.1 249 32.1
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 5.3e-33 145.6 147 51.0
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.9e-31 139.8 166 47.6
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 4.2e-30 136.0 130 56.2
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 2.1e-29 133.7 242 30.2
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 6.0e-29 132.1 207 37.7
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 8.7e-28 128.3 131 52.7
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.1e-26 123.6 176 39.8
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 2.6e-24 116.7 98 60.2
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 4.3e-19 99.4 123 43.9
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 5.5e-14 82.4 123 33.3
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 7.9e-13 78.6 93 40.9
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 2.5e-11 73.6 256 25.4
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 8.2e-10 68.6 117 33.3
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 2.6e-08 63.5 63 46.0
Haze_09398 Corylus avellana HOM05D006561 ORTHO05D008097 1.4e-06 57.8 57 57.9
Haze_09393 Corylus avellana HOM05D006561 ORTHO05D008097 2.5e-06 57.0 110 38.2


User provided reference genes

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