Gene: Solyc06g007780.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc06g007780.3
- Transcript Identifier Solyc06g007780.3.1
- Gene Type Coding gene
- Location SL4.0ch06 : 1744852-1749569 : positive
Gene Family Information
- ID HOM05D000622
- #Genes/#Species 916/100
- Phylogenetic origin
- ID ORTHO05D000475
- #Genes/#Species 879/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc06g007780.3.1
- uniprot A0A3Q7HJ32
- gene_id Solyc06g007780
Descriptions
- Description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein (AHRD V3.3 *** F4J8X6_ARATH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1900425 | ISO | PLAZA Integrative Orthology | negative regulation of defense response to bacterium | AT5G48650 |
| GO:0090332 | ISO | PLAZA Integrative Orthology | stomatal closure | AT5G48650 |
| GO:0006621 | IEA | GOA Database | protein retention in ER lumen | |
| GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003729 | IBA | GOA Database | mRNA binding | |
| GO:0046923 | IEA | GOA Database | ER retention sequence binding | |
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G48650 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G07250 |
| GO:1990904 | IBA | GOA Database | ribonucleoprotein complex | |
| GO:0005829 | IBA | GOA Database | cytosol | |
| GO:0005783 | IEA | GOA Database | endoplasmic reticulum | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005789 | IEA | GOA Database | endoplasmic reticulum membrane | |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR018222 | Nuclear transport factor 2, eukaryote |
| IPR000504 | RNA recognition motif domain |
| IPR002075 | Nuclear transport factor 2 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR039539 | Ras GTPase-activating protein-binding protein |
| IPR032710 | NTF2-like domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 16.8.1 | RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP) |