Gene: Solyc04g047820.1
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc04g047820.1
- Transcript Identifier Solyc04g047820.1.1
- Gene Type Coding gene
- Location SL4.0ch04 : 37027784-37029426 : positive
Gene Family Information
- ID HOM05D001201
- #Genes/#Species 520/96
- Phylogenetic origin
- ID ORTHO05D001100
- #Genes/#Species 487/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc04g047820.1.1
- uniprot K4BRL0
- gene_id Solyc04g047820
Descriptions
- Description Protein ROS1 (AHRD V3.3 *-* A0A2G3B2M6_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0080111 | IEA | GOA Database | DNA demethylation | |
| GO:0080111 | IEA | InterPro | DNA demethylation | |
| GO:0006284 | ISO | PLAZA Homology (enrichment) | base-excision repair | HOM05D001201 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0019104 | IEA | GOA Database | DNA N-glycosylase activity | |
| GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
| GO:0035514 | IEA | GOA Database | DNA demethylase activity | |
| GO:0035514 | IEA | InterPro | DNA demethylase activity | |
| GO:0051539 | ISO | PLAZA Homology (enrichment) | 4 iron, 4 sulfur cluster binding | HOM05D001201 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.5.3.1 | Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1) |