Gene: Solyc02g078440.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g078440.3
  • Transcript Identifier Solyc02g078440.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 41096969-41103283 : positive

Gene Family Information

  • ID HOM05D005098
  • #Genes/#Species 147/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g078440.3.1
  • uniprot A0A3Q7F4K2
  • gene_id Solyc02g078440

Descriptions

  • Description RNA polymerase II transcription factor B subunit 2 (AHRD V3.3 *** A0A2G3A8K6_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IBA
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0050790
IEA
GOA Databaseregulation of catalytic activity
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0070816
IBA
GOA Databasephosphorylation of RNA polymerase II C-terminal domain

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001671
IEA
GOA DatabaseATPase activator activity
GO:0001671
IEA
InterProATPase activator activity
GO:0003690
IBA
GOA Databasedouble-stranded DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000439
IBA
IEA
GOA Databasetranscription factor TFIIH core complex
GO:0000439
IEA
InterProtranscription factor TFIIH core complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005675
IBA
GOA Databasetranscription factor TFIIH holo complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040662 Transcription factor Tfb2, C-terminal domain
IPR004598 Transcription factor TFIIH subunit p52/Tfb2
Mapman id Description
14.6.3.2.5 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit TFB2
15.3.3.5.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB2