Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 4.2e-259 897.5 454 100.0
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 4.2e-259 897.5 454 100.0
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 2.4e-238 828.6 452 91.6
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 7.0e-238 827.0 456 91.9
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 1.0e-225 786.6 454 84.1
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.4e-225 786.2 461 87.6
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 1.7e-223 779.2 455 83.3
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 3.5e-221 771.5 454 83.0
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.6e-216 755.4 460 85.4
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 3.4e-216 755.0 454 80.0
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 4.4e-216 754.6 488 77.5
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.7e-215 752.7 454 80.0
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 2.9e-215 751.9 454 80.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 3.7e-215 751.5 452 80.5
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 6.4e-215 750.7 452 80.8
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.4e-214 749.6 455 80.9
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.8e-214 749.2 456 79.8
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.4e-214 748.8 458 81.0
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 1.6e-213 746.1 452 80.3
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 2.0e-213 745.7 467 78.8
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.7e-213 745.3 467 79.4
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 4.6e-213 744.6 452 80.8
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 1.9e-211 739.2 452 79.6
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.7e-210 734.6 453 78.8
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.5e-208 729.6 454 77.3
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 3.4e-208 728.4 452 77.2
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 3.4e-208 728.4 456 78.1
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 4.9e-207 724.5 453 79.0
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.1e-206 723.4 452 77.4
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.9e-206 722.6 454 77.3
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 5.4e-206 721.1 454 77.8
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 9.2e-206 720.3 459 77.1
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 1.2e-205 719.9 481 75.7
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 2.0e-205 719.2 453 77.0
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 2.7e-205 718.8 452 75.9
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 2.7e-205 718.8 488 74.6
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.0e-204 716.8 454 78.0
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.7e-204 716.1 454 76.9
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.7e-204 716.1 452 76.8
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 2.3e-204 715.7 451 76.9
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.0e-204 715.3 454 76.4
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 6.6e-204 714.1 452 76.8
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 6.6e-204 714.1 454 76.4
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 6.6e-204 714.1 473 75.9
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 8.6e-204 713.8 453 77.9
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 1.1e-203 713.4 454 76.7
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 2.5e-203 712.2 454 76.4
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 3.3e-203 711.8 452 76.3
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.3e-203 711.4 460 77.2
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 4.3e-203 711.4 452 76.3
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 4.3e-203 711.4 457 77.2
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 9.5e-203 710.3 455 77.1
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 9.5e-203 710.3 453 76.2
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 1.6e-202 709.5 454 76.0
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 2.1e-202 709.1 455 76.7
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 8.1e-202 707.2 452 75.9
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 8.1e-202 707.2 452 75.4
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 1.1e-201 706.8 452 75.9
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 1.4e-201 706.4 452 75.4
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 1.8e-201 706.1 451 75.4
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 3.1e-201 705.3 481 75.5
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 5.2e-201 704.5 515 73.8
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.2e-200 703.4 485 72.6
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 1.2e-200 703.4 452 75.4
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 2.0e-200 702.6 452 74.6
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 5.8e-200 701.0 454 75.3
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 2.9e-199 698.7 445 75.5
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 1.1e-198 696.8 452 74.6
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 9.2e-198 693.7 476 72.1
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.1e-195 686.8 467 73.2
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 7.3e-195 684.1 452 71.9
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 2.4e-193 679.1 470 69.6
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.3e-191 673.3 450 70.7
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 3.8e-191 671.8 415 78.8
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.9e-187 659.4 452 69.9
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 8.1e-186 654.1 455 71.4
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 9.0e-185 650.6 452 71.5
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 5.8e-184 647.9 440 73.2
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 5.8e-184 647.9 452 71.0
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 9.9e-184 647.1 403 77.9
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.1e-182 643.7 495 67.3
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 6.9e-177 624.4 400 76.8
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 2.6e-176 622.5 556 60.8
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 3.2e-174 615.5 452 67.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 5.4e-174 614.8 452 69.9
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 2.3e-172 609.4 453 68.4
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 3.9e-172 608.6 404 74.8
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 6.7e-172 607.8 515 62.9
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.9e-171 606.3 454 69.4
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 9.0e-169 597.4 385 75.8
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 9.3e-166 587.4 495 63.2
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 6.0e-165 584.7 452 66.6
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.8e-161 573.2 486 62.8
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 3.8e-159 565.5 356 78.4
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.1e-153 545.4 341 77.4
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.7e-149 532.7 433 62.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 6.1e-149 531.6 326 78.5
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 9.1e-145 517.7 455 53.6
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 5.1e-140 501.9 297 84.2
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.8e-137 493.4 417 63.5
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 2.4e-137 493.0 455 51.2
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 2.1e-125 453.4 506 50.6
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 1.8e-124 450.3 297 74.4
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.1e-121 441.0 344 67.7
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 5.0e-119 432.2 456 47.4
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.5e-115 420.6 448 48.0
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.7e-112 409.8 269 75.5
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 5.0e-111 405.6 448 46.9
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 1.8e-105 387.1 435 50.1
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 6.8e-100 368.6 276 67.8
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 3.4e-99 366.3 231 77.5
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.7e-93 345.9 206 81.1
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.3e-78 296.2 258 61.6
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 6.2e-77 292.4 148 98.0
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 3.2e-73 280.0 238 63.9
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 6.6e-71 272.3 284 52.8
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.1e-70 271.6 182 73.1
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 3.5e-64 250.0 174 69.5
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 1.9e-62 244.2 226 50.0
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.2e-59 235.0 453 32.0
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 4.9e-58 229.6 335 44.8
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 4.2e-57 226.5 462 31.4
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 4.2e-57 226.5 520 29.6
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.3e-53 214.9 556 28.6
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.0e-47 195.3 130 73.8
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 9.7e-38 162.2 97 76.3
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.6e-35 154.1 100 70.0
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.6e-35 154.1 100 70.0
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.2e-32 145.2 111 65.8
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.1e-32 144.4 119 62.2
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.4e-28 131.0 96 63.5
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.0e-22 111.3 71 78.9
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 3.7e-21 107.1 58 87.9
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 6.3e-21 106.3 70 75.7
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 8.2e-21 105.9 70 75.7
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.6e-19 100.9 81 60.5
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 1.7e-18 98.2 189 38.1
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 1.1e-17 95.5 88 55.7
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.5e-17 94.4 64 71.9
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.8e-15 88.2 55 76.4
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 7.4e-14 82.8 52 71.2
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 1.2e-11 75.5 90 48.9
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.2e-11 75.5 58 53.4
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.0e-11 74.7 52 73.1
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 1.0e-10 72.4 69 58.0
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.5e-06 58.5 38 68.4


User provided reference genes

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