Gene: Solyc01g006210.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g006210.4
  • Transcript Identifier Solyc01g006210.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 843416-847406 : negative

Gene Family Information

  • ID HOM05D005396
  • #Genes/#Species 141/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g006210.4.1
  • uniprot A0A3Q7E8S9
  • gene_id Solyc01g006210

Descriptions

  • Description Non-structural maintenance of chromosomes element 1 (AHRD V3.3 *** A0A200Q0A2_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT5G21140
GO:0000724
IBA
GOA Databasedouble-strand break repair via homologous recombination
GO:0006301
IBA
GOA Databasepostreplication repair
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G21140
GO:0004842
IBA
GOA Databaseubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0030915
IBA
IEA
GOA DatabaseSmc5-Smc6 complex
GO:0030915
IEA
InterProSmc5-Smc6 complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014857 Zinc finger, RING-like
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR011513 Non-structural maintenance of chromosomes element 1
Mapman id Description
14.3.6.2.2 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE1-NSE3-NSE4 subcomplex.ubiquitin ligase component NSE1