Gene: AT5G21140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G21140
  • Transcript Identifier AT5G21140.1
  • Gene Type Coding gene
  • Location Chr5 : 7187416-7189521 : negative

Gene Family Information

  • ID HOM05D005396
  • #Genes/#Species 141/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G21140.1
  • symbol emb1379
  • uniprot Q84VP9

Descriptions

  • Description embryo defective 1379
  • Computational description embryo defective 1379 (emb1379); CONTAINS InterPro DOMAIN/s: Nse1 non-SMC component of SMC5-6 complex (InterPro:IPR011513), Zinc finger, RING-like (InterPro:IPR014857); Has 255 Blast hits to 254 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 105; Plants - 49; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0000724
IBA
Gene Ontologydouble-strand break repair via homologous recombination1
GO:0006301
IBA
Gene Ontologypostreplication repair1
GO:0006302
IMP
Gene Ontologydouble-strand break repair2
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004842
IBA
Gene Ontologyubiquitin-protein transferase activity1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030915
IEA
GOA DatabaseSmc5-Smc6 complex
GO:0030915
IBA
Gene OntologySmc5-Smc6 complex1
GO:0030915
IEA
InterProSmc5-Smc6 complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR014857 Zinc finger, RING-like
IPR011513 Non-structural maintenance of chromosomes element 1
Mapman id Description
14.3.6.2.2 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE1-NSE3-NSE4 subcomplex.ubiquitin ligase component NSE1