Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 8.1e-177 623.6 313 100.0
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.4e-173 612.8 315 98.4
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 6.4e-166 587.4 315 93.7
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.6e-153 546.2 315 86.3
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 7.1e-141 504.2 313 81.2
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.1e-132 476.1 292 80.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.7e-118 429.9 289 77.2
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.0e-114 416.4 319 65.8
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 6.5e-110 401.4 319 63.6
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.5e-109 400.2 316 64.9
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 4.2e-109 398.7 316 65.2
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 2.1e-108 396.4 316 63.9
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 4.0e-107 392.1 319 63.9
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.2e-106 390.6 314 62.1
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.5e-106 390.2 319 63.9
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 7.5e-106 387.9 314 63.4
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.3e-105 387.1 318 62.6
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 8.2e-105 384.4 319 62.7
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 9.1e-104 380.9 318 63.8
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.7e-102 376.7 311 62.1
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 6.5e-102 374.8 313 62.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 3.2e-101 372.5 302 61.6
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.2e-101 372.1 309 60.8
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.6e-100 370.2 313 61.0
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 2.7e-100 369.4 320 60.0
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.6e-100 369.0 307 61.9
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 4.7e-100 368.6 306 61.1
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 8.0e-100 367.9 320 60.9
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.0e-99 367.5 317 62.1
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 5.2e-99 365.2 317 61.2
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 5.2e-99 365.2 315 57.8
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 6.8e-99 364.8 318 60.7
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 9.8e-98 360.9 318 61.0
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.3e-97 360.5 323 58.2
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.7e-97 359.0 324 58.3
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 4.8e-97 358.6 310 59.7
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 4.8e-97 358.6 272 65.4
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.8e-97 358.6 312 61.5
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 8.3e-97 357.8 375 52.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.8e-96 356.7 327 57.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.2e-95 354.0 329 56.2
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 2.0e-95 353.2 312 60.9
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.0e-95 353.2 321 56.7
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 2.7e-95 352.8 358 53.9
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.7e-95 352.8 315 60.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 3.5e-95 352.4 329 58.4
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.5e-95 352.4 318 58.5
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.5e-95 352.1 299 62.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 5.9e-95 351.7 319 56.1
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 5.9e-95 351.7 307 59.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 7.7e-95 351.3 329 58.1
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.0e-94 350.9 271 63.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 2.9e-94 349.4 308 56.8
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.9e-93 346.7 320 56.9
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.2e-92 344.0 237 71.7
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.1e-92 343.2 318 56.0
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.8e-92 342.8 313 56.5
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.6e-92 342.4 313 59.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.6e-92 342.4 313 59.1
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 6.1e-92 341.7 267 65.2
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 6.1e-92 341.7 271 63.8
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.1e-92 341.7 312 59.3
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.0e-91 340.9 329 53.5
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-91 340.5 268 63.4
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.4e-91 340.5 268 64.6
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.4e-91 340.5 313 57.5
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.8e-91 340.1 318 57.2
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 2.3e-91 339.7 315 57.5
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 2.3e-91 339.7 315 57.5
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 3.0e-91 339.3 271 63.5
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.0e-91 339.3 301 58.8
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.0e-91 339.0 313 55.3
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 6.8e-91 338.2 317 54.9
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 8.9e-91 337.8 267 64.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 8.9e-91 337.8 259 64.9
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.5e-90 337.0 260 63.8
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.0e-90 336.7 317 54.6
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 7.5e-90 334.7 313 57.2
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 7.5e-90 334.7 301 56.5
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.7e-89 333.6 315 56.2
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.7e-89 333.6 260 62.7
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 2.2e-89 333.2 312 55.8
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 2.8e-89 332.8 313 56.9
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 4.9e-89 332.0 309 57.6
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 6.3e-89 331.6 333 52.6
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.2e-87 327.4 291 56.4
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.2e-87 327.4 293 55.6
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 3.5e-87 325.9 312 55.1
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 7.8e-87 324.7 311 55.3
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.3e-86 323.2 289 55.7
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.9e-86 322.8 285 55.8
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.9e-86 322.8 298 55.0
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 3.8e-86 322.4 293 53.9
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 5.0e-86 322.0 291 55.3
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 5.0e-86 322.0 291 55.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 8.6e-86 321.2 316 53.8
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.5e-85 320.5 291 54.6
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 3.3e-85 319.3 340 51.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.3e-85 318.9 373 49.1
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 8.0e-84 314.7 302 56.0
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.3e-83 313.2 211 73.5
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-83 312.8 318 53.5
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 7.5e-82 308.1 324 52.2
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 4.9e-81 305.4 214 71.0
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.4e-80 303.1 317 52.1
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.2e-80 302.8 236 62.3
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.2e-76 290.8 325 49.5
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.4e-72 276.6 210 67.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 4.6e-71 272.3 327 48.9
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.1e-64 251.1 217 57.6
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.6e-62 241.9 259 51.0
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.8e-59 233.8 368 38.9
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-56 224.6 245 52.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.1e-56 224.6 312 39.7
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.9e-56 223.8 240 52.9
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 3.2e-56 223.0 310 42.3
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.2e-55 221.1 220 55.0
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.5e-53 214.2 237 51.5
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.4e-51 206.8 240 50.4
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 5.8e-50 202.2 202 54.5
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.7e-49 200.7 230 44.3
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 7.1e-48 195.3 186 54.8
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.6e-47 194.1 400 35.8
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 6.0e-47 192.2 251 47.8
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 5.6e-45 185.7 314 40.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.0e-43 179.5 200 51.5
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-41 174.5 194 51.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.9e-40 170.6 264 34.5
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.1e-40 168.7 198 44.4
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.6e-36 157.5 203 45.3
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 5.8e-34 149.1 103 71.8
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 6.4e-33 145.6 163 50.9
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-32 144.8 108 63.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 6.7e-30 135.6 140 48.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 5.8e-26 122.5 294 31.0
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 5.1e-22 109.4 109 56.0
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.3e-17 94.7 196 30.1
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 5.7e-13 79.3 197 27.9
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.2e-08 63.2 80 37.5
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 5.5e-08 62.8 45 64.4


User provided reference genes

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