Gene: AT1G70070

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G70070
  • Transcript Identifier AT1G70070.1
  • Gene Type Coding gene
  • Location Chr1 : 26390016-26394148 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G70070.1
  • symbol EMB25
  • Alias ISE2,INCREASED SIZE EXCLUSION LIMIT 2,PDE317,PIGMENT DEFECTIVE 317
  • full_name EMBRYO DEFECTIVE 25
  • uniprot B9DFG3

Descriptions

  • Description DEAD/DEAH box helicase
  • Computational description EMBRYO DEFECTIVE 25 (EMB25); FUNCTIONS IN: RNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: posttranscriptional gene silencing, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy; LOCATED IN: stress granule, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT3G46960.1); Has 21396 Blast hits to 12786 proteins in 1473 species: Archae - 1027; Bacteria - 4600; Metazoa - 5457; Fungi - 2724; Plants - 1158; Viruses - 307; Other Eukaryotes - 6123 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IMP
Gene OntologymRNA processing1
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007
GO:1901259
IMP
Gene Ontologychloroplast rRNA processing2
GO:0016554
IMP
Gene Ontologycytidine to uridine editing2
GO:0000373
IMP
Gene OntologyGroup II intron splicing1
GO:0016441
IMP
Gene Ontologyposttranscriptional gene silencing3
GO:0010497
IMP
NAS
Gene Ontologyplasmodesmata-mediated intercellular transport3 4
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
ISS
Gene OntologyRNA helicase activity3
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IDA
Gene OntologymRNA binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
Gene Ontologychloroplast6 7
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma8
GO:0009536
IEA
GOA Databaseplastid
GO:0005634
ISM, IBA
Gene Ontologynucleus9
GO:0010494
IDA
Gene Ontologycytoplasmic stress granule3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
Mapman id Description
16.11.4.1.1.3 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.RNA helicase (ISE2)